Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06449 ATGGCTTCCGGTGGAGGTTTATACGAGAAACTAACGACGGTGATGACCTCTGATCACGCATCAGTGGTGTCAATGAACCTGTTCGTTGCTCTTCTCTGCACTTGCATCATCATTGGTCATTTGTTGGAGGAGAATCGATGGATTAATGAATCCATCACTGCTCTTCTCATTGGTCTCTGTACTGGGGTTTTCATACTGCTTACCACTGGAGGAAAAAGCTCTCATATATTGCTTTTCAGCGAAGATCTTTTCTTTATTTACCTTCTTCCACCCATCATTTTCAATGCAGGGTTTCAGGTCAAGAAGAAACAATTTTTCCGCAATTTTATGACTATCATGCTCTTTGGTGCAATTGGTACATTGATATCATTCTGCATCATATCACTAGGTGCCATCCACTTTTTCCAGATATTAGATATTGGTTCCCTCAAGATTGGAGATTACCTAGCAATTGGAGCAATATTTTCAGCAACAGATTCTGTTTGCACATTGCAGGTTCTTAATCAGGATGAGACACCTTTACTATATAGCCTGGTGTTTGGGGAGGGGGTAGTAAATGATGCTACCTCTGTAGTACTCTTCAAAGCAATTCAGAATTTTGACCTCTCCCACATTGACTTAATCACTGCTTTGCAGTTAGTAGGAAATTTTTTATATTTATTCATCGCAAGCACTGTGCTGGGAATCTTAGCTGGATTGCTTAGTGCATTCATTATTAAAAAGCTCTATTTTGGCAAGTTGATAAGGCATTCTACAGACCGTGAGGTTGCTCTCATGATACTCATGGCTTACCTTTCATATATGCTAGCTGAACTATTTTCATTAAGTGCCATTCTTACTGTGTTCTTCAGTGGCATTGTTATGTCTCACTACACGTGGCATAATGTGACTGAAAGTTCAAGAGTGACAACCAAGCATGCTTTTGCCACTTTGTCATTCATTGCTGAGATCTTTATCTTCCTTTATGTTGGGATGGATGCACTAGATATAGAGAAGTGGCGATTTGTAAGTCAAAGCCCAAGAAAATCGATTGGGGCCAGTTCGTTGTTGTTGGCACTTATCCTAGTGGGAAGAGCTGCATTTGTTTTCCCTCTGTCCTTCTTATCCAACTTGTCCAAGAAGTCTCAATCCGAGAAAATTGAATTAAAGCAACAAGTATGTATTTTGCTGCACTTTCCGTTTCAGGGTCTGATAAGTGAATCAATTGATGTATTACATTCCTAA 1224 0.3979 MASGGGLYEKLTTVMTSDHASVVSMNLFVALLCTCIIIGHLLEENRWINESITALLIGLCTGVFILLTTGGKSSHILLFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAIGTLISFCIISLGAIHFFQILDIGSLKIGDYLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFKAIQNFDLSHIDLITALQLVGNFLYLFIASTVLGILAGLLSAFIIKKLYFGKLIRHSTDREVALMILMAYLSYMLAELFSLSAILTVFFSGIVMSHYTWHNVTESSRVTTKHAFATLSFIAEIFIFLYVGMDALDIEKWRFVSQSPRKSIGASSLLLALILVGRAAFVFPLSFLSNLSKKSQSEKIELKQQVCILLHFPFQGLISESIDVLHS. 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06449 407 Gene3D - 144 196 - -
Seca8g06449 407 PRINTS Na+/H+ exchanger signature 112 120 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Seca8g06449 407 PRINTS Na+/H+ exchanger signature 152 162 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Seca8g06449 407 PRINTS Na+/H+ exchanger signature 97 111 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Seca8g06449 407 PRINTS Na+/H+ exchanger signature 83 94 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Seca8g06449 407 PANTHER SODIUM/HYDROGEN EXCHANGER 16 388 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Seca8g06449 407 Pfam Sodium/hydrogen exchanger family 29 386 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06449 Seca-Chr8 158898128 158901808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06449 7 399 Antiporters AT3G05030 77.099 0.0 612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06449 - - gmx:100791224 696.427