Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06446 ATGGGGTGTGTGTTTGGGAAAGAGGCTTCAGAGAGAAGGAAGGAAGAGAGGGAAGAGGAAGTGGAAGTTGCAAAGGCAGAGGAGGTTCAAAGTGGTGATAATAATGCAAAGGAGGGTGAAGAGAAGGAGAAGAGCAAAAGGCCTAAGAGGGAAAAGAGGAGATCTTCAAAGCCAAATCCAAGGTTGAGCAGTCCACCAAACCATGTGCATGGTGAGCAAGTGGCTGCAGGGTGGCCCTCTTGGCTCTCTAAGGTTGCTGGGGAAGCCATAAATGGATTGACCCCTAGAAGGGCAGACACTTTTGAGAAGCTTGATAAGATTGGACAAGGTACATATAGCAATGTTTACAAGGCTAAAGATACTTTAACTGGAAAAATTGTTGCCCTAAAGAAGGTCCGTTTTGACAATTTAGAACCTGAGAGTGTGAAATTCATGGCCAGAGAAATTCTGATTCTGCGGCGTCTGGATCATCCCAATGTTGTCAAATTAGAAGGTTTAGTGACTCTAGAATGTCATGCAGTTTGTATCTTGTCTTTCAATACATGGAGCATGATTTAG 558 0.4409 MGCVFGKEASERRKEEREEEVEVAKAEEVQSGDNNAKEGEEKEKSKRPKREKRRSSKPNPRLSSPPNHVHGEQVAAGWPSWLSKVAGEAINGLTPRRADTFEKLDKIGQGTYSNVYKAKDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTLECHAVCILSFNTWSMI. 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06446 185 Gene3D Phosphorylase Kinase; domain 1 89 179 - -
Seca8g06446 185 PANTHER CELL DIVISION PROTEIN KINASE 99 169 - -
Seca8g06446 185 ProSitePatterns Protein kinases ATP-binding region signature. 107 130 IPR017441 GO:0005524
Seca8g06446 185 Coils Coil 7 27 - -
Seca8g06446 185 Pfam Protein kinase domain 101 174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06446 185 MobiDBLite consensus disorder prediction 7 47 - -
Seca8g06446 185 FunFam probable serine/threonine-protein kinase At1g54610 88 182 - -
Seca8g06446 185 ProSiteProfiles Protein kinase domain profile. 101 185 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06446 185 MobiDBLite consensus disorder prediction 1 72 - -
Seca8g06446 185 SUPERFAMILY Protein kinase-like (PK-like) 95 170 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06446 Seca-Chr8 158882091 158882974 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06446 96 168 Core Cell Cycle Gene Families AT5G10270 55.405 1.28e-16 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Seca8g06446 Pkinase 1.8e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06446 K08819 - gmx:100791757 248.825