Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06444 ATCGAAGAGGACGAGGAGGAGCTCGAAGCCGTGGCTCGCTCCGCTAGCTCCGACGATGAAGATAACGTGCCAGATGAAGACGGCGAAGATGCTGACGACGATAAACAGCGAGAGAAGGCCAGATTGAAAGAAATGCAACAATTGAAGAAACAGAAGATTCAGGAGATATTGGATGAACAAAATGCAGCCATTGATGCTGATATGAACAATAGAGGAAAGGGCCGATTGAAGTATCTCTTACAGCAAACTGAGCTCTTTGCTCATTTTGCCAAAAGTGATCAATCTTCATCTCAAAAGAAGTCAAAGGGAAGGGGACGCCATGCATCAAAAGTGACCGAAGAAGAGGAGGATGAAGAATACCTTAAAGAAGAAGATGGTTTAGCAAACACACGGCTGGTGACTCAACCATCATGTATCCAAGGGAAGATGAGGGATTACCAACTTGCTGGGCTAAACTGGCTCATACGATTGTATGAGAATGGAATAAATGGAATTCTGGCTGATGAAATGGGGCTTGGTAAAACCTTACAAACTATCTCTTTGTTGGGCTATTTACATGAGTTCAGAGGAATAACAGGCCCTCATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGTCCTGTTCTACGTGCAATAAAGTTCCTTGGCAATCCTGATGAAAGGAGGCATATAAGAGAGGAGCTATTGGTTGCTGGAAAGTTTGATGTGTGTGTGACGAGTTTTGAAATGGTAATCAAGGAGAAGTCTGCTTTGCGTCGATTTAGTTGGCGTTACATAGTTATTGATGAAGCCCATCGTATCAAGAATGAGAACTCCCTCCTGTCCAAAACGATGAGGCTATACAATACAAACTATCGACTCCTTATAACTGGCACACCACTGCAGAACAATCTTCATGAACTCTGGGCTCTTCTCAACTTTCTTCTGCCTGAAATTTGTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTTGTTCAGCAACTACACAAGGTCCTCCGTCCATTTCTTCTTCGAAGGCTGAAATCAGATGTTGAGAAAGGGTTGCCACCAAAAAAAGAGACCATTCTCAAAGTAGGCATGTCGCAAATGCAGAAACAGTATTATAGGGCATTGCTGCAGAAGGATCTCGAGGTTGTGAATGCTGGTGGAGAACGGAAACGTCTGCTAAATATAGCAATGCAATTACGTAAATGTTGTAATCACCCATATCTCTTCCAAGGTGCTGAACCCGGTCCTCCCTATACAACAGGAGACCATCTCATTACAAATGCAGGTAAAATGGTTCTACTGGATAAATTACTTCGTAAACTAAAAGAACGGGATTCTAGGGTCCTTATATTTTCACAGATGACTAGGCTGTTAGACATACTTGAAGATTATTTGATGTTTCGTGGATACCAATATTGTCGCATAGATGGCAATACTGGTGGAGAAGATCGTGATGCTTCCATTGAGGCTTTCAACAAACCAGGAAGTGATAAATTTGTCTTCTTGTTATCTACTCGGGCTGGAGGTCTTGGAATTAATCTTGCTATTGCTGATGTTGTCATTCTTTATGATAGTGACTGGAACCCACAAGTTGACCTGCAAGCTCAGGATCGTGCTCATAGAATTGGTCAAAAGAAAGAAGTTCAAGTTTTTCGATTCTGCACTGAGTATACGATTGAGGAAAAAGTCATTGAAAGGGCATACAAAAAACTTGCACTTGATGCTCTGGTGATTCAGCAAGGGCCATTAGCTGAGCAGAAGACTGTTAATAAAGATGAATTGCTGCAAATGGTTAGATTTGGGGCTGAAATGGTTTTTAGTTCCAAGGATAGCACAATTACAGATGAAGATATTGACAGAATTATCGCTAAAGGAGAGGAAGCAACGACTGAGCTTGATGCTAAGATGAAGAAATTTACTGAAGATGCTATCAAATTCAAGATGGATGACACTGCTGAGTTGTATGCTTTTGATGATGAGAAGGATGAAAAAAAAGTTGATTTCAAAAAACTTGTGAGTGAAAATTGGGTTGAGCCACAAGAAGAGAACGGAAGCGCAAAGTCTGAGTACTTCAAGCAAACACTGCGCCAAGGTGGTCCTACTAAACCAAAAGAACCCCGAATTCCTAGGATGCCTCAATTGCATGATTTCCAGTTTTTCAACACACAAAGGCTGGGTGAGCTGTATGAAAAGGAAGTTCGCTATCTAATGCAAACACATCAGAAGAATCAGATAAAAGATTCCATAGATGTTGATGAACAAGAAGAGGTGGGAGATCCATTGACTGCTGAAGAGTTGGAAGAAAAGGAGCATCTGCTAGAGGAGGGATTTTCATCATGGAGCCGGAAGGACTTCAATACTTTCATCAGGGCATGTGAAAAGTATGGCCGAAATGATGTAAAAAGTATTGCTTCTGATGGAAGGAAAAACAGATGA 2481 0.4152 IEEDEEELEAVARSASSDDEDNVPDEDGEDADDDKQREKARLKEMQQLKKQKIQEILDEQNAAIDADMNNRGKGRLKYLLQQTELFAHFAKSDQSSSQKKSKGRGRHASKVTEEEEDEEYLKEEDGLANTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAIKFLGNPDERRHIREELLVAGKFDVCVTSFEMVIKEKSALRRFSWRYIVIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWALLNFLLPEICSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLRKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGEDRDASIEAFNKPGSDKFVFLLSTRAGGLGINLAIADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGPLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATTELDAKMKKFTEDAIKFKMDDTAELYAFDDEKDEKKVDFKKLVSENWVEPQEENGSAKSEYFKQTLRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLGELYEKEVRYLMQTHQKNQIKDSIDVDEQEEVGDPLTAEELEEKEHLLEEGFSSWSRKDFNTFIRACEKYGRNDVKSIASDGRKNR. 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06444 826 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 704 793 IPR036306 GO:0003677|GO:0006338|GO:0031491
Seca8g06444 826 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 113 358 IPR027417 -
Seca8g06444 826 CDD DEXHc_SMARCA1_SMARCA5 140 360 IPR044754 GO:0005524
Seca8g06444 826 SMART helicmild6 474 558 IPR001650 -
Seca8g06444 826 MobiDBLite consensus disorder prediction 1 48 - -
Seca8g06444 826 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 360 642 IPR027417 -
Seca8g06444 826 FunFam ISWI chromatin-remodeling complex ATPase CHR11 694 790 - -
Seca8g06444 826 Pfam HAND 704 786 IPR015194 GO:0003677|GO:0006338|GO:0031491
Seca8g06444 826 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 155 320 IPR014001 -
Seca8g06444 826 Pfam SNF2-related domain 156 423 IPR000330 GO:0005524|GO:0140658
Seca8g06444 826 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 448 599 IPR001650 -
Seca8g06444 826 Coils Coil 35 62 - -
Seca8g06444 826 Pfam Helicase conserved C-terminal domain 446 558 IPR001650 -
Seca8g06444 826 Gene3D ISWI, HAND domain 695 790 IPR036306 GO:0003677|GO:0006338|GO:0031491
Seca8g06444 826 Gene3D - 144 359 IPR038718 -
Seca8g06444 826 FunFam ISWI chromatin-remodeling complex ATPase CHR11 364 656 - -
Seca8g06444 826 MobiDBLite consensus disorder prediction 33 48 - -
Seca8g06444 826 CDD SF2_C_SNF 444 569 - -
Seca8g06444 826 SMART ultradead3 139 331 IPR014001 -
Seca8g06444 826 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 38 814 - -
Seca8g06444 826 MobiDBLite consensus disorder prediction 90 122 - -
Seca8g06444 826 ProSiteProfiles SANT domain profile. 790 826 IPR017884 -
Seca8g06444 826 Gene3D - 364 656 IPR027417 -
Seca8g06444 826 Gene3D - 791 826 - -
Seca8g06444 826 FunFam Chromatin-remodeling complex ATPase 144 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06444 Seca-Chr8 158868735 158875644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06444 164 585 RAD5 or RAD16-like Gene Family AT1G02670 28.119 1.20e-43 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca8g06444 SNF2_N 2.4e-71 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06444 K11654 - gmx:100791510 1472.22