Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06439 ATGTCATCTGAGCCGCTGATTCAACCGCCGGACACAGTACCGGCGTTCCGGCAATGGGGAGAACCGGCGCGGATTTTCGAGGAGTTGCCCAAAGCCACCATCGTGTCCGTGTCACGACCAGAAACTGGAGACATAAGCCCAATTCTCCTTTCTTATACCATTGAGTTGCAGTACAAACAGTTCAAGTGGCGTCTACGGAAGAAAGCATCACAAGTTCTCTATTTACAGTTTGCATTGCGAAAACGTGCATTAATTGAAGATTTACATGACAAGCAAGGGCAGGTAAAAGAGTGGCTTCAAAGCTTAGGAATAGGAGATCAAACGGTGATGGTGCAAGATGATGAAGAACCTGATGATGGAGCTGTACCTATACATCATGAAGACAGTGTTAAAAACAGATATGTCCCATCTGTAGCTGCTCTATCAATAATTCGTCCATCACTAGGAGGTCAACAGTCAGTTGCAGATAGAGCCAAAGTTGCAATGCAGAGTTATTTGGGACTTTTTTTAGGAAACCTGGATATTGTGAATTCTCAAGAGGTCTGCAAGTTTTTGGAGGTCTCCAAGCTATCCTTTTTACAGGAATATGGTCCAAAACTGAGAGAGGGATATGTAACAGTGAAGCATTTGTCAAATATTTCACAGGATTCTGATGTAACATGCTTCCCATGTGATTGGTTTCATTGGTGTAATAACAGCTGGAAGAAGGTATGGGCTGTTTTGAAACCTGGGTTTTTGGCCTTGCTGGATGATCCCATCAACAACAAACTACTGGATATAATTATGTTTGATGTCCTCCCATTCTCAACTGGAAATGAAGGCACCAAAATACATTTAGCTGAACCTATAAAGGAACACAATCCTTTGCGTTACACATTTAAGGTTTCTAGTGGAAATCGGAGCATATGCTTGAGAACTACCAGCAGTGTTAAAGTTAAAGCTTGGGTTACTTCAATTAATGAAGCTGGTCTAAGACCTATGGAGGGTTGGTGTTGTTCTCATCGCTTTGGTTCATTTGCTCCCATAAGAGGTTTGACTGAAGATGGGAGCCAAGCCCAATGGTATATAGATGGTCAGGCAGCATTTGAAGCAATTGCTTCTTCAATTCAAGATGCAAAGTCAGAGATCTTCATTACAGGATGGTGGCTATGTCCAGAGCTATATCTGAAACGGCCTTTTCATAGTTTTTCTACCTTTAGGTTAGACTCATTACTAGAAGAAAAAGCTAAGCAAGGGGTTCAGATTTATGTGCTTCTCTACAAGGAGGTTTCTTTAGCTTTGAAAATCAACAGCTCATACAGTATGAGAAGACTGCTCAAAATCCATGAAAATGTGAGGGTATTGCGCTATCCTGACCATTTTGCTTCTCGTGTGTATTTATGTATGCATCTGTTTATGATGAATGTTGGCTTGGTTTCTTACAGGTCGCACCACGAAAAGCTTGTAATTATAGACTACAAGATTTGCTATATTGGAGGATTAGATTTATGCTTTGGACGATATGACACACCTGAACATAGAGTGGGTGATTGCCCCTCTTTAATATGGCCTGGAAAGGACTATTACAATCCAAGAGAATCGGAACCAAATTCATGGGAAGACACCATGAGGGATGAATTGGATCGCCAGAAATATCCCCGTATGCCATGGCATGATGTCCATTGTGCTCTTTGGGGACCTCCCTGCCGTGACATTGCTAGGCACTTTGTTCAACGTTGGAACCATGCTAAGAGAACTAAAGCTCCAAATGAACATGAAATTCCACTACTTTTGCCTCACCATCACATGGTCCTCCCACATTACATGGGAAGAAGCAAAGAGATAGACATTGATGGAAAGCAAGATGAAGACGACAGGAAAGAAATTGACAGGCAGGACTCATTTTCCTCACAGTCTCCAGTGCAAGATATACCACTGCTTTTACCTCAAGAAGCTGGTGAACTAGTTACTTCGAGTGGAGATCATACAAATGCCAGTGAAAATTCTCCATTGCTGTCCCAAAATCCAGAACACAAAACTCTAGTTTCAGTTAACCGAAAGAAAGGATTTCAAGATCAAGTTCTTACTTTTAACTTGGGGGCAGAGTCTGTTGTTAATGTTCTAGATGATTGGTGGGAAACACCAGAAGGTACCAATGATGCCACTACTTTGGAATATGGACAAGTTGGTCCACGTACTACTTGTCACTGTCAGGTAATCAGAAGTGTCAGTCAGTGGTCTGCTGGAACAAGTCAGCCTGAAGAAAGCATTCACAATGCATATTGTTCTCTTATTGAAAATGCAAAGCATTTTATTTACATTGAGAACCAATTTTTTATATCAGGTCTAGCAAAGGATGACATAATACAGAACCGTGTTTTGGAAGCGCTATACAGGCGTATTTTGCAAGCCCACAAAGAACAGAAAGATTTTCGAGTTATAATTGTGATGCCCCTCTTGCCTGGCTTCCAGGGTGGTCTGGATGATGGTGGTGCTGCAACTGTGAGAGCCTTAACACATTGGCAGTATAGAACAATTTCTAGAGAAAGGCACTCCATATTACACAATCTTGAAGCTAAACTTGGTCCTAAGATGCATGATTATATTTCTTTCTATGGTCTAAGATCTCATGGAAGACTTTATAAGGATGGTCCTATGGCTACAAGCCAGGTATACGTGCACAGTAAATTGATGATAATTGATGACCGTGTAGCTTTTATTGGATCATCTAATATAAATGACCGGAGTTTGCTTGGATCAAGAGACTCTGAGATTGGAGTGCTTATAGAAGACAAAGAATATGTTGACTCATTGATGAATGGGAAGCCATGGAAGGCTGGGAAATTTTCCCATAGCCTGCGCTGCTCCCTATGGTCTGAGCACCTTGGTCTTCATGCTGGAGAGATCAGTAAAATCAGTGATCCAGTAGCAGATTCAACCTACAAGAACTTATGGTCAGGAACTGCAAAGGAAAATACAAGGATTTACCATGAAGTCTTCGCTTGCATTCCCAATGATCAGATACACTCAAGAGCTGCACTTCGGCAAAGTATGGTTCACTGGAAAGAAAAACTTGGTCATAACACCATAGATTTGGGAATAGCCCCTGATAAATTAGTCTGTCATGAGAATGGAGAAACCAAAGTAATAGACCCGATAGATAGATTGAAGTATGTTAAGGGACATCTTGTTTCCTTTCCTTTGGAGTTCATGCGTGAGGAAGATCTAAGACCAGCTGTGATTGAGAGTGAGTTTTATGTATCTCCTCAAGTATATCACTAA 3261 0.414 MSSEPLIQPPDTVPAFRQWGEPARIFEELPKATIVSVSRPETGDISPILLSYTIELQYKQFKWRLRKKASQVLYLQFALRKRALIEDLHDKQGQVKEWLQSLGIGDQTVMVQDDEEPDDGAVPIHHEDSVKNRYVPSVAALSIIRPSLGGQQSVADRAKVAMQSYLGLFLGNLDIVNSQEVCKFLEVSKLSFLQEYGPKLREGYVTVKHLSNISQDSDVTCFPCDWFHWCNNSWKKVWAVLKPGFLALLDDPINNKLLDIIMFDVLPFSTGNEGTKIHLAEPIKEHNPLRYTFKVSSGNRSICLRTTSSVKVKAWVTSINEAGLRPMEGWCCSHRFGSFAPIRGLTEDGSQAQWYIDGQAAFEAIASSIQDAKSEIFITGWWLCPELYLKRPFHSFSTFRLDSLLEEKAKQGVQIYVLLYKEVSLALKINSSYSMRRLLKIHENVRVLRYPDHFASRVYLCMHLFMMNVGLVSYRSHHEKLVIIDYKICYIGGLDLCFGRYDTPEHRVGDCPSLIWPGKDYYNPRESEPNSWEDTMRDELDRQKYPRMPWHDVHCALWGPPCRDIARHFVQRWNHAKRTKAPNEHEIPLLLPHHHMVLPHYMGRSKEIDIDGKQDEDDRKEIDRQDSFSSQSPVQDIPLLLPQEAGELVTSSGDHTNASENSPLLSQNPEHKTLVSVNRKKGFQDQVLTFNLGAESVVNVLDDWWETPEGTNDATTLEYGQVGPRTTCHCQVIRSVSQWSAGTSQPEESIHNAYCSLIENAKHFIYIENQFFISGLAKDDIIQNRVLEALYRRILQAHKEQKDFRVIIVMPLLPGFQGGLDDGGAATVRALTHWQYRTISRERHSILHNLEAKLGPKMHDYISFYGLRSHGRLYKDGPMATSQVYVHSKLMIIDDRVAFIGSSNINDRSLLGSRDSEIGVLIEDKEYVDSLMNGKPWKAGKFSHSLRCSLWSEHLGLHAGEISKISDPVADSTYKNLWSGTAKENTRIYHEVFACIPNDQIHSRAALRQSMVHWKEKLGHNTIDLGIAPDKLVCHENGETKVIDPIDRLKYVKGHLVSFPLEFMREEDLRPAVIESEFYVSPQVYH. 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06439 1086 MobiDBLite consensus disorder prediction 612 670 - -
Seca8g06439 1086 MobiDBLite consensus disorder prediction 612 626 - -
Seca8g06439 1086 SUPERFAMILY Phospholipase D/nuclease 720 932 - -
Seca8g06439 1086 CDD PLDc_vPLD1_2_yPLD_like_2 742 926 - -
Seca8g06439 1086 PIRSF PLD_euk 598 1086 IPR016555 GO:0004630|GO:0006654|GO:0048017
Seca8g06439 1086 PIRSF PLD_euk 32 610 IPR016555 GO:0004630|GO:0006654|GO:0048017
Seca8g06439 1086 SMART PH_update 199 326 IPR001849 -
Seca8g06439 1086 PANTHER PHOSPHOLIPASE D 158 1070 IPR015679 -
Seca8g06439 1086 SMART pld_4 473 500 IPR001736 GO:0003824
Seca8g06439 1086 SMART pld_4 882 909 IPR001736 GO:0003824
Seca8g06439 1086 SUPERFAMILY PH domain-like 228 325 - -
Seca8g06439 1086 Gene3D Endonuclease Chain A 694 945 - -
Seca8g06439 1086 CDD PLDc_vPLD1_2_yPLD_like_1 352 511 - -
Seca8g06439 1086 ProSiteProfiles PH domain profile. 198 324 IPR001849 -
Seca8g06439 1086 Pfam PLD-like domain 755 929 IPR025202 -
Seca8g06439 1086 CDD PH_PLD 176 322 - -
Seca8g06439 1086 Gene3D Endonuclease Chain A 345 593 - -
Seca8g06439 1086 Gene3D - 201 322 IPR011993 -
Seca8g06439 1086 SUPERFAMILY Phospholipase D/nuclease 322 592 - -
Seca8g06439 1086 MobiDBLite consensus disorder prediction 649 670 - -
Seca8g06439 1086 Pfam Phospholipase D Active site motif 476 500 IPR001736 GO:0003824
Seca8g06439 1086 FunFam Phospholipase 716 936 - -
Seca8g06439 1086 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 882 909 IPR001736 GO:0003824
Seca8g06439 1086 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 473 500 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06439 Seca-Chr8 158807642 158819117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06439 24 1086 Phospholipase D Gene Family (Wang group) AT3G05630 65.000 0.0 1399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06439 K01115 - gmx:100796914 1914.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06439 8 158807642 158819117 Seca8g06439 8 158807642 158819117 ECH