Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06431 ATGAAGACATCCACTCTTGTTTTTCCACTCTTGTTTCTCTTATTCCTTTCTCCCTCTCTTGCAGCTTTATTCTCAGCCTCCCCAAATACCACATGTGACCTTACACCCTACCCGGCATTCTGCACAACTACTCTGCCTTCTAACTATTTCTATTTATCCATACATGACCAAGCCCGTTTCTTCCTTCAACATTCCTTGTCAACAACAAAAACGATTCTTGAATTGATCTCTTCTTATCTCAGAGACCAGTCCACTATTCCTGATTCCACACTAAATGCCCTTGAAGATTGTCTCAATCTTGCTGAGCTTAATATTGATTTCTTGTCCAATGTCCTCCAAGCCATCCAAAAAACTACCACCATAACTACCTATCAGGCTTATGATTTGCAAACCTTTCTTAGTGCCGTTTTAACCAATCAACAAACATGCTTGGATGGTTTTCATGAGGTAACTCCTTATCCTAGAGTCACCAGTGGCTTATCAAGCCCTCTTTCTGATGGAATCAAACTTTATAGCATATCTCTGGCACTTTTCACCCGCGGTTGGGTTAGCAATGCCACAGGAAGATCAAAAATAGTTGAAATGACCATGAATAGAAAGTTACTTCAGAAAAACATTGACAATTTAGTGGTGACAAAAAAGGTGGTGGTCAACCCTGATGGTTCTGGGGATTTCACAACCATAAATGATGCAGTGGATGCTGCACCTAACAATACCGGCACCAACAATGGGTACTATGTAATTTATGTTGTTGCTGGGATTTACAATGAGTACGTGTCTATTGCTAAGAGCAAGGAGAACCTTATGATCATTGGAGATGGTATTAACAGCACTGTGATCACCGGCAATCGTAGCGTGGTTGATGGTTGGACCACTTTCCAGTCCGCCACTTTTGCTGTGGTAGGAAAAGGGTTTGTTGCAGTGAACATAACATTTCGCAATACTGCGGGGTCCAGCAAGCATCAAGCGGTAGCTGTGAGAAATGGGGCGGACATGTCATCATTCTACAATTGTAGTTTTGAAGGGTACCAAGACACATTGTACGCTCATTCCCTTAGGCAATTTTACAAAAACTGTGACATTTATGGCACAGTGGATTTTATATTTGGCAATGCAGCAGCAGTATTCCAGAGCTGTAACATGTACCCAAGACTTCCTATGCAAAACCAATTCAATGCAATCACAGCACAAGGCAGAACAGATCCTAACCAGAACACTGGATTCTCCATACAGAACTGTTGCATAGTAGCTGCCAGTGAGTTAGGTGATACTAGTAGTAATTATAATAACATAAAGACATATTTGGGTCGGCCTTGGAAGGAGTATTCAAGGACGGTTTATATTCAATCTTTCATGGATGGCCTAATTGATCCAAAGGGTTGGATTGAATGGTCAGGGGATTTTGCTTTAAGCACACTGTATTATGCAGAATTTGCTAACTGGGGACCAGGTTCAAATATTAGCAATAGAGTCACATGGGAAGGGTACCATCTCATTGATGAAAAGGATGCAAATGATTTCACAGTGGACAGATTTATACAAGGTGACACATGGTTGCCCAAGACAGGAGTGCCTTTCAAAGCAGGGTTACAGTGA 1596 0.416 MKTSTLVFPLLFLLFLSPSLAALFSASPNTTCDLTPYPAFCTTTLPSNYFYLSIHDQARFFLQHSLSTTKTILELISSYLRDQSTIPDSTLNALEDCLNLAELNIDFLSNVLQAIQKTTTITTYQAYDLQTFLSAVLTNQQTCLDGFHEVTPYPRVTSGLSSPLSDGIKLYSISLALFTRGWVSNATGRSKIVEMTMNRKLLQKNIDNLVVTKKVVVNPDGSGDFTTINDAVDAAPNNTGTNNGYYVIYVVAGIYNEYVSIAKSKENLMIIGDGINSTVITGNRSVVDGWTTFQSATFAVVGKGFVAVNITFRNTAGSSKHQAVAVRNGADMSSFYNCSFEGYQDTLYAHSLRQFYKNCDIYGTVDFIFGNAAAVFQSCNMYPRLPMQNQFNAITAQGRTDPNQNTGFSIQNCCIVAASELGDTSSNYNNIKTYLGRPWKEYSRTVYIQSFMDGLIDPKGWIEWSGDFALSTLYYAEFANWGPGSNISNRVTWEGYHLIDEKDANDFTVDRFIQGDTWLPKTGVPFKAGLQ. 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06431 531 Gene3D - 209 530 IPR012334 -
Seca8g06431 531 SUPERFAMILY Pectin lyase-like 212 529 IPR011050 -
Seca8g06431 531 Pfam Plant invertase/pectin methylesterase inhibitor 29 177 IPR006501 GO:0004857
Seca8g06431 531 ProSitePatterns Pectinesterase signature 2. 361 370 IPR033131 -
Seca8g06431 531 PANTHER PECTINESTERASE 18 520 - -
Seca8g06431 531 Pfam Pectinesterase 215 516 IPR000070 GO:0030599|GO:0042545
Seca8g06431 531 CDD PMEI-like_3 30 182 - -
Seca8g06431 531 NCBIfam pectinesterase inhibitor domain 2 178 IPR006501 GO:0004857
Seca8g06431 531 FunFam Pectinesterase 208 530 - -
Seca8g06431 531 Gene3D Invertase/pectin methylesterase inhibitor family protein 26 180 IPR035513 -
Seca8g06431 531 SMART PMEI_2 23 177 IPR006501 GO:0004857
Seca8g06431 531 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 180 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06431 Seca-Chr8 158761783 158764183 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06431 11 530 Carbohydrate Esterase AT4G02330 50.877 0.0 557
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06431 K01051 - gmx:100810329 840.106