Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06430 ATGTCTGGGGGAGATGCAGAGAGGGGAAAGAGCATCGTCATCATTGGCCTATCTTCCTTGTTACTAGTGGCCATGATTGTCGCCGTCACTATTGGTCTTAACGACAATGAGAATAGTTCCGATGGTGATAATTTAGAGGACAACAGGAAGCATCACATCGTTTCAACCGTGTCAGCAATTCAAACCCTTTGCCATCCCACAGATTACAAGAAGGAATGTGAGGAAAGCCTCATAGCAGAGGCTGGCGACACCACTGACCCAAAAGAATTGATCAAAATCGCCTTTAACGTTACCATTAAGAAAATTGGTGACAAACTCAAGGAAACAGAGCTATTGCAAGAGGTTGAGAAGGAACCTAGAGCCAAGATGGCACTTGACACGTGCAAGCAACTCATGGGTCTTTCAATTGAGGAATTCAAGAGGTCACTTGATGAAATAGGTGAGTTTGATCTCACAAATCTTGACAAGATCCTCATGAATTTAAAGGTTTGGCTGAGCGGTGCAGTGACATACCAAGATACATGCTTGGATGGGTTTGAGAACACCACGAGCAAAACTAGTGCAAAGATGAAGGAACTATTAACAACAGGCATGCACATGAGTAGCAATGCCCTTGCCATTGTTTCAGATTTTGCTGACACTGTCTCAGATTGGAATGTCACAAAGTTATTTGGGCGTCGCCTCCTTCAAGATTCTGAGAAGACTCCTTCTTGGGTTGACGAACGAACTCTCCTCGGTACAAACACAAGTACATTCAAGCCTAATGTGACTGTGGCTATAGATGGTAGTGGAGATTTCAAGAGCATCAATGAGGCATTGAAGCATGTGCCTGAGGACAATGAAGAGCTATTTGTCATCTACATCAAGGAAGGCATTTACCAAGAGTACGTTGAAGTTACCACGCAAATGACCTATGTGGTGTTTGTTGGTGATGGTGGTCAAAAGACAAGAATCACTGGCAACAAAAACTTCATAGATGGGATTAACACCTACAGAACCGCTACAGTTGCAATTCAAGGAGATCATTTTGTTGCTATGAATATGGGTTTTGAGAACTCAGCTGGGCCCCACAAGCATCAAGCAGTGGCATTGAGGGTTCAAGGAGACAAGTCCATCTTCTACAATTGCTCAATGGATGGATATCAGGACACACTTTATGTACACACCATGCGTCAATTCTATAGAGATTGCACTATTTCAGGTACCATTGACTTCGTCTTTGGTAATGCACTGTCCGTTTTCCAGAACTGCACTTTTGTGATTCGGAAGCCATTGAAAAATCAGCAATGCATTGTGACGGCACAAGGTAGGAAAGAAAGGCAACAACCATCAGGAATAGTGATCCAAGGAGGATCCATTGTGTCTGATCCTCTGTTCTATGAAGTGAGGTTTGAGAATAAGGCGTACCTTGCTCGTCCATGGAAGAATTACTCAAGGACTGTCTTCATGGATACATACATTGATGATTTGATTCATCCTGATGGTTATTTGCCATGGCAAGGAGAAGAGGGTCCTTCTGGTATGAACACTTGCTTTTATGCTGAGTACCACAATACTGGTCCCGGTTCTGATAAATCCAAGCGTGTCAATTGGGCTGGGATTTGGAACCTCAATTCAAAAGCTGCAAACTCGTTCTCACCGTCCAAGTTCTTTCATGGGGATGATTGGATTGAGGTTATCGGGATTCCTTACTTTCCTGGTGTTCCTACCCACCACAGGCACAAAAAGACAATACTTAATTGGTGA 1746 0.4347 MSGGDAERGKSIVIIGLSSLLLVAMIVAVTIGLNDNENSSDGDNLEDNRKHHIVSTVSAIQTLCHPTDYKKECEESLIAEAGDTTDPKELIKIAFNVTIKKIGDKLKETELLQEVEKEPRAKMALDTCKQLMGLSIEEFKRSLDEIGEFDLTNLDKILMNLKVWLSGAVTYQDTCLDGFENTTSKTSAKMKELLTTGMHMSSNALAIVSDFADTVSDWNVTKLFGRRLLQDSEKTPSWVDERTLLGTNTSTFKPNVTVAIDGSGDFKSINEALKHVPEDNEELFVIYIKEGIYQEYVEVTTQMTYVVFVGDGGQKTRITGNKNFIDGINTYRTATVAIQGDHFVAMNMGFENSAGPHKHQAVALRVQGDKSIFYNCSMDGYQDTLYVHTMRQFYRDCTISGTIDFVFGNALSVFQNCTFVIRKPLKNQQCIVTAQGRKERQQPSGIVIQGGSIVSDPLFYEVRFENKAYLARPWKNYSRTVFMDTYIDDLIHPDGYLPWQGEEGPSGMNTCFYAEYHNTGPGSDKSKRVNWAGIWNLNSKAANSFSPSKFFHGDDWIEVIGIPYFPGVPTHHRHKKTILNW. 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06430 581 Pfam Plant invertase/pectin methylesterase inhibitor 59 207 IPR006501 GO:0004857
Seca8g06430 581 Pfam Pectinesterase 255 554 IPR000070 GO:0030599|GO:0042545
Seca8g06430 581 Gene3D - 248 568 IPR012334 -
Seca8g06430 581 Gene3D Invertase/pectin methylesterase inhibitor family protein 55 211 IPR035513 -
Seca8g06430 581 SUPERFAMILY Pectin lyase-like 249 567 IPR011050 -
Seca8g06430 581 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 211 IPR035513 -
Seca8g06430 581 CDD PMEI-like_3 62 212 - -
Seca8g06430 581 ProSitePatterns Pectinesterase signature 2. 399 408 IPR033131 -
Seca8g06430 581 SMART PMEI_2 55 207 IPR006501 GO:0004857
Seca8g06430 581 NCBIfam pectinesterase inhibitor domain 56 208 IPR006501 GO:0004857
Seca8g06430 581 FunFam Pectinesterase 56 212 - -
Seca8g06430 581 ProSitePatterns Pectinesterase signature 1. 280 299 IPR018040 -
Seca8g06430 581 PANTHER PECTINESTERASE 18 558 - -
Seca8g06430 581 FunFam Pectinesterase 249 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06430 Seca-Chr8 158755788 158758022 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06430 5 568 Carbohydrate Esterase AT3G05610 48.944 0.0 598
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06430 K01051 - gmx:100803527 978.008