Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06429 ATGGTAGTTGCCATTACAATTGGCGTTAACGTCAGTCAGGGTGATTCCAATGATTCAAAAAATACCGACAAGGCACGCATAGCTGCCACTGCAAAAGCAGTTAGAAGTTTTTGCAATCCAACGGATTATAGGAAAGAGTGCGAGGAAAGCCTCATGGAAACCGCTCTCAACACAACAGACCCAAGAGAACTCATTAAAATCGCCTTCAACATAACCATTAGAAAAATCGGTTCTGGACTCAAGAAAACCGATATCTGGCATGAGGTTGAGAAGGATCCAAGGGCTAAGATGGCACTTGACACGTGCAAACAACTCATGGATCTTTCAATTGAGGAATTCAAAAGGTCACTTGAGAGAATCGGCACGTTTGATCTCAACAATCTCGATAACATCCTCACGAACTTAAAGGTGTGGCTTAGCGGTGCAGTCACATACCAAGATACTTGTTTAGATGGTTTTGAGAACACCACAAGTGATGTTGGTGTGAAAATGAAGAACTTATTAACAAGCACAATGCACATGACGAGCAATGCCCTTGCTATCATTATAGATCTGGAAACAGCATTTTTAGATATGAATCTATCAACAGAGAGGCGTAGCGCCATTGATGATACAGATCAGCTTCCTTCTTGGGTTGATGATTGTCATGGTGTTGGTGTTCGTAGACTCCTTCATGATAATCCACACAAACTCAAGCCTAATTTGGTTGTAGCCAAAGATGGCAGTGGAAAATACAAGAGCATCAGTAAGGCATTGAAGAAAGTGCCTAAGAAGAACAAAAAACCATTCGTGATTTACATCAAGGAAGGCGTTTACCGTGAGTATCTTGAAATTACCAAGAAAATGACACACGTCGTGTTCGTTGGTGATGGTGGCAACAGGACACGAATCACTGGCAACAAAAATTTCATAGATGGAATTAACACTTACAGAACCCCCACTGTTACTGTTCAAGGAGATTACTTTGTGGCAATCAATATAGGGTTTGAGAATTCTGCTGGTCCTCAGAAACATCAAGCAGTGGCCATAAGGGTTCAAGCAGACAAATCCATCTTTTACAAATGCACAATGGATGGGTATCAAGACACGTTATATGCTCATGCCATGCGCCAATTCTATAGGGATTGCACAATTTCAGGCACAATTGATTTTATCTTTGGTGATGCAGTAGCTGTATTTCAGAATTGCACTTTCGTGATTAGAAAGCCGTTGGAAAATCAACAATGTATTGTAACTGCACAGGGAAGGAGGGAGAGGCATCAACCATCAGGAATTATCATTCAAGGGGGTTCCATTGTGCCTGATCACACGGTGAAGTTTGATAACAAGGCCTACTTAGCTCGTCCATGGAAGAATTTCTCTAGGACCATCTTTATGGATACTTATATTGGGGGTTTGATTCAACCTGATGGATATATGCCATGGCAAGGACCACAGGGTCCTTCTGGTATGAACACATGTTTCTATGCAGAGTACAACAACACTGGACCTGGTTCTGATAAATCAAAACGTGTAAAATGGCGTGGGATCAAGACCCTCACATCACAATCCGCAACTAAATTCATACCAGCTAAATTCTTTCATGGAGACGATTGGATCAGGGTTACTAGGATACCTTACTCCTCTGGCTTGCCCCGCCACACAAGCAATGCACAGAAGGGAAAGAGCATTGCAATCATTGGTGTATCTGCCTTATTACTAGTGGCTATGGTTGTGGCCGTCACAATTAGTTACAATAAAAACGATACAAAAAATGATATAGAGGACAATAGGAAGCACCACGTGGCTTCCACAATCAAAGCAGTCCAAACCCTTTGTCATCCCACCGATTACAAGAAGGAATGTGAGGAAAGCCTCATAGCAGAGGCTGGCAACACCACTGACCCAAAAGAATTGATCAAAATTGCCTTTAACGTTACCATTAAGAAAATTGGTGACAAACTCAAGGAAACAGAGCTATTGCACGAGGTTGAGAAGGAACCTAGAGCTAAGATGGCACTTGACACGTGTAAGCAACTCATGGATCTTTCAATTGAGGAATTCAAGAGGTCAATTGATGAAATAGGTGAGTTTGATCTCACAAATCTTGACAAGATCCTCATGAATTTAAAGGTTTGGCTAAGCGGTGCAGTGACATACCAAGATACATGCTTGGATGGGTTTGAGAACACCACCAGCGAAGCTAGTGCAAAGATGAAGGAACTATTAACAACAGGCATGCACATGAGTAGCAATGCCCTTGCCATTGTTTCAGATTTTGCTGACACTGTCTCAGATTGGAATGTCACAAAGTTATTTGGGCGTCGCCTCCTTCAAGATTCTGAGACTACTCCTTCTTGGGTTGATGAACGAACTCTCCTTGGTACAAACACAAGTACATTCAAGCCTAATTTGACTGTGGCTATAGATGGTAGTGGAGATTTCAAGAGCATCAATGAGGCATTGAAGCATGTGCCTGAGAACAATGAAGAGCCATTTGTTATATACATCAAGGAAGGCATTTACCAAGAGTATGTTGAAGTTACCAAGCAAATGACCTATGTGGTGTTTGTTGGTGATGGTGGCCAAGAGACAAGAATCACTGGCAACAAAAATTTCATAGATGGGATTAACACCTACAGAACCGCTACAGTTGCAATTCAAGGAGATCATTTTGTTGCTATTAATATGGGTTTTGAGAACTCTGCTGGGCCCCACAAGCATCAAGCAGTGGCATTAAGAGTTCAAGGAGACAAGTCCATCTTCTACAATTGCTCAATGGATGGATATCAGGACACACTTTATGTACACACCATGCGTCAATTCTATAGAGATTGCACTATTTCAGGTACCATTGACTTCGTCTTTGGTAATACGCTGTCAGTTTTCCAGAACTGCACTTTTGTGGTGCGAAAGCCATTGAAAAATCAGCAATGCATTGTGACGGCACAAGGAAGGAAAGAAAGGCGACAACCATCAGGAATAGTGATCCAAGGAGGATCCATTGTGTCTGATCCTCTGTTTTATGAAGTGAGGTTTGAGAATAAGGCGTACCTTGCTCGTCCATGGAAGAATTACTCAAGGACTGTCTTCATGGATACATACATTGACGATTTGATTCATCCTGATGGTTATTTGCCATGGCAAGGAGAAGAGGGTCCTTCTGGTATGAACACTTGCTTTTATGCTGAGTACCACAATACTGGTCCCGGTTCTGATAAATCCAAACGTGTCAATTGGGCTGGGATCTGGAACCTCAATTCAAAAGCCGCAAACTCATTCTCACCATCCAAGTTCTTTCATGGGGATGATTGGATTGAGGTTACTGGGATTCCTTACTTTCCTGGCGTTCCTACCCACCATAGGCACAAAAAGACAATACTTAATTGGTGA 3372 0.4217 MVVAITIGVNVSQGDSNDSKNTDKARIAATAKAVRSFCNPTDYRKECEESLMETALNTTDPRELIKIAFNITIRKIGSGLKKTDIWHEVEKDPRAKMALDTCKQLMDLSIEEFKRSLERIGTFDLNNLDNILTNLKVWLSGAVTYQDTCLDGFENTTSDVGVKMKNLLTSTMHMTSNALAIIIDLETAFLDMNLSTERRSAIDDTDQLPSWVDDCHGVGVRRLLHDNPHKLKPNLVVAKDGSGKYKSISKALKKVPKKNKKPFVIYIKEGVYREYLEITKKMTHVVFVGDGGNRTRITGNKNFIDGINTYRTPTVTVQGDYFVAINIGFENSAGPQKHQAVAIRVQADKSIFYKCTMDGYQDTLYAHAMRQFYRDCTISGTIDFIFGDAVAVFQNCTFVIRKPLENQQCIVTAQGRRERHQPSGIIIQGGSIVPDHTVKFDNKAYLARPWKNFSRTIFMDTYIGGLIQPDGYMPWQGPQGPSGMNTCFYAEYNNTGPGSDKSKRVKWRGIKTLTSQSATKFIPAKFFHGDDWIRVTRIPYSSGLPRHTSNAQKGKSIAIIGVSALLLVAMVVAVTISYNKNDTKNDIEDNRKHHVASTIKAVQTLCHPTDYKKECEESLIAEAGNTTDPKELIKIAFNVTIKKIGDKLKETELLHEVEKEPRAKMALDTCKQLMDLSIEEFKRSIDEIGEFDLTNLDKILMNLKVWLSGAVTYQDTCLDGFENTTSEASAKMKELLTTGMHMSSNALAIVSDFADTVSDWNVTKLFGRRLLQDSETTPSWVDERTLLGTNTSTFKPNLTVAIDGSGDFKSINEALKHVPENNEEPFVIYIKEGIYQEYVEVTKQMTYVVFVGDGGQETRITGNKNFIDGINTYRTATVAIQGDHFVAINMGFENSAGPHKHQAVALRVQGDKSIFYNCSMDGYQDTLYVHTMRQFYRDCTISGTIDFVFGNTLSVFQNCTFVVRKPLKNQQCIVTAQGRKERRQPSGIVIQGGSIVSDPLFYEVRFENKAYLARPWKNYSRTVFMDTYIDDLIHPDGYLPWQGEEGPSGMNTCFYAEYHNTGPGSDKSKRVNWAGIWNLNSKAANSFSPSKFFHGDDWIEVTGIPYFPGVPTHHRHKKTILNW. 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06429 1123 ProSitePatterns Pectinesterase signature 1. 822 841 IPR018040 -
Seca8g06429 1123 ProSitePatterns Pectinesterase signature 2. 378 387 IPR033131 -
Seca8g06429 1123 FunFam Pectinesterase 598 754 - -
Seca8g06429 1123 SMART PMEI_2 597 749 IPR006501 GO:0004857
Seca8g06429 1123 SMART PMEI_2 29 181 IPR006501 GO:0004857
Seca8g06429 1123 Gene3D - 791 1110 IPR012334 -
Seca8g06429 1123 Gene3D - 228 544 IPR012334 -
Seca8g06429 1123 SUPERFAMILY Pectin lyase-like 792 1109 IPR011050 -
Seca8g06429 1123 CDD PMEI-like_3 36 182 - -
Seca8g06429 1123 Gene3D Invertase/pectin methylesterase inhibitor family protein 597 753 IPR035513 -
Seca8g06429 1123 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 186 IPR035513 -
Seca8g06429 1123 FunFam Pectinesterase 228 544 - -
Seca8g06429 1123 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 601 753 IPR035513 -
Seca8g06429 1123 FunFam Pectinesterase 30 186 - -
Seca8g06429 1123 ProSitePatterns Pectinesterase signature 2. 941 950 IPR033131 -
Seca8g06429 1123 CDD PMEI-like_3 604 754 - -
Seca8g06429 1123 SUPERFAMILY Pectin lyase-like 232 543 IPR011050 -
Seca8g06429 1123 Pfam Plant invertase/pectin methylesterase inhibitor 601 749 IPR006501 GO:0004857
Seca8g06429 1123 Pfam Plant invertase/pectin methylesterase inhibitor 33 181 IPR006501 GO:0004857
Seca8g06429 1123 FunFam Pectinesterase 791 1110 - -
Seca8g06429 1123 NCBIfam pectinesterase inhibitor domain 597 750 IPR006501 GO:0004857
Seca8g06429 1123 NCBIfam pectinesterase inhibitor domain 28 183 IPR006501 GO:0004857
Seca8g06429 1123 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 182 IPR035513 -
Seca8g06429 1123 PANTHER PECTINESTERASE 560 1100 - -
Seca8g06429 1123 Pfam Pectinesterase 234 530 IPR000070 GO:0030599|GO:0042545
Seca8g06429 1123 Pfam Pectinesterase 797 1096 IPR000070 GO:0030599|GO:0042545
Seca8g06429 1123 ProSitePatterns Pectinesterase signature 1. 259 278 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06429 Seca-Chr8 158748333 158761222 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06429 1 544 Carbohydrate Esterase AT3G05610 50.362 0.0 581
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06429 K01051 - gmx:100776244 989.564