Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06427 ATGTCTGGGGGAGATGCACAGAAGGGAAAGAGCATTGCAATCATTGGTGTATCTGCCTTATTACTAGTGGCTATGGTTGTGGCTGTCACAGTTAGTTACAATAAAAACGGTTCAGAAAATGATATAGAGGACAATAGGAAGCACCACGTGGCTTCCACAATCAAAGCAGTCCAAACCCTTTGTCATCCCACCGATTACAAGAAGGAATGTGAGGAAAGCCTCATAGCAGAGGCTGGCAACACCACTGACCCGAAAGAATTGATCAAAATTGCCTTTAACGTTACCATTAAGAAAATTGGTGACAAACTCAAGGAAACAGAGCTATTGCACGAGGTTGAGAAGGAGCCTAGAGCCAAGATGGCACTTGACACGTGTAAGCAACTCATGGATCTTTCAATTGAGGAATTCAAGAGGTCAATTGATGAAATATGTGAGTTTGATCTCACAAATCTTGACAAGATCCTCATGAATTTAAAGGTTTGGCTAAGCGGTGCAGTGACATACCAAGATACATGCTTGGATGGGTTTGAGAACACCACCAGCGAAGCTAGTGCAAAGATGAAGGAACTATTAACAACAGGCATGCACATGAGTAGCAATGCCCTTGCCATTGTTTCAGATTTTGCTGACACTGTCTCAGATTGGAATGTCACTAAGTTATTTGGGCGTCGCCTCCTTCAAGATTCTGAGACTACTCCTTCTTGGGTTGATGAACGAACTCTCCTTGGTACAAACACAAGTACATTCAAGCCTAATTTGACTGTGGCTATAGATAGTAGTGGAGATTTCAAGAGCATCAATGAGGCATTGAAGCATGTGCCTGAGAACAATGAAGAGCCATTTGTCATATACATCAAGGAAGGCATTTACCAAGAGTAA 879 0.4243 MSGGDAQKGKSIAIIGVSALLLVAMVVAVTVSYNKNGSENDIEDNRKHHVASTIKAVQTLCHPTDYKKECEESLIAEAGNTTDPKELIKIAFNVTIKKIGDKLKETELLHEVEKEPRAKMALDTCKQLMDLSIEEFKRSIDEICEFDLTNLDKILMNLKVWLSGAVTYQDTCLDGFENTTSEASAKMKELLTTGMHMSSNALAIVSDFADTVSDWNVTKLFGRRLLQDSETTPSWVDERTLLGTNTSTFKPNLTVAIDSSGDFKSINEALKHVPENNEEPFVIYIKEGIYQE. 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06427 292 PANTHER PECTINESTERASE 15 292 - -
Seca8g06427 292 FunFam Pectinesterase 53 209 - -
Seca8g06427 292 Pfam Plant invertase/pectin methylesterase inhibitor 56 204 IPR006501 GO:0004857
Seca8g06427 292 CDD PMEI-like_3 59 209 - -
Seca8g06427 292 NCBIfam pectinesterase inhibitor domain 51 205 IPR006501 GO:0004857
Seca8g06427 292 Gene3D - 209 292 IPR012334 -
Seca8g06427 292 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 208 IPR035513 -
Seca8g06427 292 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 56 208 IPR035513 -
Seca8g06427 292 Pfam Pectinesterase 252 292 IPR000070 GO:0030599|GO:0042545
Seca8g06427 292 SUPERFAMILY Pectin lyase-like 246 292 IPR011050 -
Seca8g06427 292 SMART PMEI_2 52 204 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06427 Seca-Chr8 158733262 158734140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06427 5 292 Carbohydrate Esterase AT3G05610 42.466 5.79e-79 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06427 K01051 - gmx:100820556 450.669