Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06426 ATGGATGGATATCAGGACACACTTTATGTACACACCATGCGTCAATTCTATAGAGATTGCACTATTTCAGGTACCATTGACTTTGTCTTTGGTAATGCGCTGTCAGCTTTCCAGAACTGCACTTTTGTGGTGCGAAAGCCATTGAAAAATCAGCAATGCATTGTGACGGCACAAGGAAGGAAAGGAAGGCAACAACCATCGGGAATAGTGATCCAAGGAGGATCCATTGTGTCTGATCCTCTGTTTTATGAAGTGAGGTTCGAGAATAAGGCGTACCTTGCTCGTCCATGGAAGAATTACTCAAGGACTGTCTTCATGGATACATACATTGACGATTTGATTCATCCTGATGGTTATTTGCCATGGCAAGGAGAAGAGGGTCCTTCTGGTATGAACACTTGCTTTTATGCTGAGTACCACAATACTGGTCCCGGTTCTGATAAATCCAAGCGTGTCAATTGGGCTGGGATCTGGAACCTCAATTCAAAAGCCGCAAACTCATTCTCACCATCCAAGTTCTTTCATGGGGATGATTGGATTGAGGTTATTGGGATTCCTTACTTTCCTGACGCTGCTTTTGGACATTGGAATAGGACGCTGCTTGTTGGAATATCACTGATGGATGATGCTGTTGAACGTCGGAATGCTGCTGTTGGAAATCCACTCTTGTTGAATGTTGCTGCCATGCCTAAGAAAGATTGA 702 0.4387 MDGYQDTLYVHTMRQFYRDCTISGTIDFVFGNALSAFQNCTFVVRKPLKNQQCIVTAQGRKGRQQPSGIVIQGGSIVSDPLFYEVRFENKAYLARPWKNYSRTVFMDTYIDDLIHPDGYLPWQGEEGPSGMNTCFYAEYHNTGPGSDKSKRVNWAGIWNLNSKAANSFSPSKFFHGDDWIEVIGIPYFPDAAFGHWNRTLLVGISLMDDAVERRNAAVGNPLLLNVAAMPKKD. 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06426 233 Pfam Pectinesterase 1 177 IPR000070 GO:0030599|GO:0042545
Seca8g06426 233 PANTHER PECTINESTERASE 1 181 - -
Seca8g06426 233 SUPERFAMILY Pectin lyase-like 2 189 IPR011050 -
Seca8g06426 233 Gene3D - 1 191 IPR012334 -
Seca8g06426 233 ProSitePatterns Pectinesterase signature 2. 22 31 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06426 Seca-Chr8 158731385 158732935 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06426 1 188 Carbohydrate Esterase AT5G49180 51.596 3.42e-71 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06426 K01051 - lja:Lj0g3v0289939.1 365.155