Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06424 ATGAGCAGGGTTAATAGGCCTCCACTATCCTTGTCAAGATTGATTAGGTTTATGAAGGGGAAGGTTTGTGTTTTTGAAGGTAAGACTGCTGTGGTGGTGGGGACTGTAACTGATGATATACGTGTTTATGAAGTTCCAGCCTTGAAAGTTACAGCACTCAGGTTTACAGAGACTGCACGAGCAAGAATAGAGAAGGCAGGTGGTGAATGCTTGACATTTGATCAGTTGACTATTAGGGCCCCTCTGGGAAGAACACAGTCCTTCTTAGAGGCCCGAAGAATGCTCGTGAAGCTGTGA 297 0.4545 MSRVNRPPLSLSRLIRFMKGKVCVFEGKTAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLTIRAPLGRTQSFLEARRMLVKL. 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06424 98 Gene3D - 1 97 - -
Seca8g06424 98 PANTHER 60S RIBOSOMAL PROTEIN L18 1 93 IPR000039 GO:0003735|GO:0005840|GO:0006412
Seca8g06424 98 SUPERFAMILY Ribosomal proteins L15p and L18e 2 85 IPR036227 -
Seca8g06424 98 Pfam Ribosomal protein 60S L18 and 50S L18e 1 93 IPR021131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06424 Seca-Chr8 158720725 158721840 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06424 1 89 Cytoplasmic Ribosomal Protein Gene Family AT3G05590 70.787 1.56e-40 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06424 K02883 - jre:108980661 141.739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06424 8 158720725 158721840 Seca2g05289 2 139435305 139445606 PCT