Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06419 ATGAGTCGAGGAGGTGCAGCTGGTCCCAAAGGGAAGAAGAAGGGTGTGACATTCACCATTGACTGCGCCAAGCCAGTGGAGGACAAGATCATGGACATTGCATCCCTCGAGAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGCAAGGCCGGTGCTCTTGGTGATACCGTCTCTGTTACACGCGAGAAGACCAAGATCACTGTCACTTCTGACAGCAACTTCTCCAAACGGGTATCTGAAGTACTTGACAAAGAAGTACTTGAAGAAACACAATGTACGGGACTGGCTCAGAGTGATTGCTTCTAA 306 0.4902 MSRGGAAGPKGKKKGVTFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVSVTREKTKITVTSDSNFSKRVSEVLDKEVLEETQCTGLAQSDCF. 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06419 101 FunFam 60S ribosomal protein L22-2 5 94 - -
Seca8g06419 101 Gene3D - 6 97 IPR038526 -
Seca8g06419 101 PANTHER 60S RIBOSOMAL PROTEIN L22 3 91 IPR002671 GO:0003735|GO:0005840|GO:0006412
Seca8g06419 101 Pfam Ribosomal L22e protein family 14 90 IPR002671 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06419 Seca-Chr8 158674085 158676615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06419 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 83.117 3.33e-42 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06419 K02891 - jre:109012705 145.976
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06419 8 158674085 158676615 Seca8g06419 8 158674085 158676615 ECH