Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06417 ATGAGTGGCCGCTCAAGTCGCACAATTTATGTTGGCAACCTTCCTGGTGATATTCGCTTGAGAGAAGTAGAGGATCTTTTCTACAAGTATGGTCCTATTGTTGACATTGATTTGAAGATTCCTCCAAGACCACCGGGTTACGCTTTTGTTGAGTTTGAGGATGCTCGTGATGCTGAAGATGCCATTCACTATCGAGATGGTTACAATTTTGATGGTTTTCGATTACGAGTTGAACTTGCACATGGTGGACGGGGATATTCATCATCAGTAGACCGTTACAGTAGTTATAGTGGTAGCAGTGGTAGCCGTGGTGTTTCCAGGCGTTCTGACTATCGTGTTCTGGTGACTGGATTACCTCCTTCTGCTTCATGGCAAGACCTGAAAGATCACATGCGTAAAGCTGGTGATGTGTGTTTTTCTCAAGTGTTCCGGGAGCGTGGAGGCATGACTGGGATAGTGGATTATACCAATTATGATGATATGAAATATGCCATCAGGAAACTTGATGACTCAGAATTTCGAAATGCCTTTTCTCGGGCATACATACGGGTGAGGGAATATGATCGGGGTTATTCAAGAAGTCCTAGTTGTGATTCAAGGAGGAGCTATTCTAGAAGCCCCAGCCGTAGTCCATATATATCACGAAGTCGAAGTCGTAGCTATAGTAGCAGGAGCAGAAGGTTCAGTTTTGTTGTGTTGGTGTGGTCTCCAAAAGCAAAACACTCTCGGCATTCATTATCTCTTTCAAGGTCAGTTTTTACCTAA 765 0.4392 MSGRSSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDARDAEDAIHYRDGYNFDGFRLRVELAHGGRGYSSSVDRYSSYSGSSGSRGVSRRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYAIRKLDDSEFRNAFSRAYIRVREYDRGYSRSPSCDSRRSYSRSPSRSPYISRSRSRSYSSRSRRFSFVVLVWSPKAKHSRHSLSLSRSVFT. 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06417 254 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Seca8g06417 254 Gene3D - 2 111 IPR012677 -
Seca8g06417 254 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Seca8g06417 254 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Seca8g06417 254 CDD RRM2_SF2_plant_like 111 186 - -
Seca8g06417 254 FunFam serine/arginine-rich splicing factor SR34A-like 111 188 - -
Seca8g06417 254 SMART rrm1_1 8 78 IPR000504 GO:0003723
Seca8g06417 254 SMART rrm1_1 112 181 IPR000504 GO:0003723
Seca8g06417 254 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Seca8g06417 254 CDD RRM1_SF2_plant_like 8 79 - -
Seca8g06417 254 MobiDBLite consensus disorder prediction 88 105 - -
Seca8g06417 254 MobiDBLite consensus disorder prediction 85 105 - -
Seca8g06417 254 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 5 223 - -
Seca8g06417 254 MobiDBLite consensus disorder prediction 190 218 - -
Seca8g06417 254 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 1 110 - -
Seca8g06417 254 Gene3D - 112 188 IPR012677 -
Seca8g06417 254 MobiDBLite consensus disorder prediction 196 218 - -
Seca8g06417 254 SUPERFAMILY RNA-binding domain, RBD 5 178 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06417 Seca-Chr8 158658188 158661334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06417 8 80 Eukaryotic Initiation Factors Gene Family AT3G11400 32.895 8.87e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06417 K12890 - gmx:100794282 344.354