Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06403 ATGAATGCGATGACGAACGACAACAACAACATATCTTCAGACCAAGTAATTGCAGAAATGCTTGAAATGGGTTTTGAGTATTCCAACATTCTTGAAGCCATCAAAGTAGTGGGTCCATCGGTTCCCAGCGCTGTGGAGCATATCTTCAATACTACTAACAACCGTGACCGTGAAACATCCAATACCCAAACCTACAAATTACGTTCACGTAATGGGAATTCTCTCAAAAAACGAACTTTTCCCTCGTCCCTTCAAGCTCCAAAGTCAAGGGTACTCAACCATTATTTCCAATCCATTGATAAAGCCACAAAGAGCAAGAACAATGACGTTGTTGCTGTTGATGTGGAAGAGCACAAGGAGCCTTCTTTACCTCAAATTGGAGTTGATCTTCCCGGTGTCGCTCAAGATTTGGATATTTCATCCGTTTGGGAGCAGAGAGTTAGCTATCTGTTGCAAAAGCATTTTGGTTTTTCATCCTTGAAAAGTTTTCAGAAGGAAGCACTCTCTACATGGGTTGCTAATAAAGACTGTCTTGTCCTGGCTGCAACAGGATCTGGGAAATCTCTGTGCTTTCAGATTCCTGCATTGTTAACTGGGAAAGTGGTGGTTGTGATTTCACCTTTGATAAGCTTGATGCATGATCAATGCTTAAAGCTTACAAGCCTTGGAATCAGTGCTTGCTTTCTTGGCTCTGGGCAACCGGATGATACTGTTGAAGAGAAAGCAATGAAAGGCATGTATAATATAATTTATGTTTGCCCAGAGACAATCAAAAGATTGATTCAATCACTGCAGAAGCTTGCAGAAAGCCGTGGCATTGCTTTATTTGCAATTGATGAGGCACATTGCATTTCTAAATGGGGTCATGATTTCCGTCCAGCCTACAGCCAACTGTCTGTGTTGAGGGAAAATTTCAGTATTGGCAAGCTAAAATCCCTGAAATTTGATATACCTCTGATGGCCTTGACAGCTACAGCTACAAAGAGAGTTCGAGAAGACATTTTAAAATCTCTATGCATGTCAAAAGAAACAAATGTTGTTCTCACATCATTTTTTCGATCTAACTTACGCTTCACGGTAAAGCATAGTAGAACATCACGGGCTTCTTATGAGAAAGATTTTCATGAATTGATTAAAGTATATGGTAGAGAGCAAAATATTGGTGGAAAAAAAGATTTCATGTCAGATGATTCAGATGATGTTTCCAATGTCTCTGATGCTAGTAGAAGTTCTGATACAGACAGTAATTCTTCTTATGATGTGGATGACAATCAAGATGACTATGGCGATAAAGATATAAATATAATCCACTCAGGCAATACAGACCATTTTATAAAGGCAAAAGAATTGTCAATTGAATTACTGGAAAATGACGATGGTGTCTCTCAAAGTAGGGATAACTCTGATGCTACCTGTGGTGAATTTTGCGTACAACCTCCTCCCAAGGAGCTTTTGGATCAAGGACCAACAATCATATATGTAACCACCAGAAAAGAAACACTGAGAATTGCAAAGTATCTATGCAAGTTTGGTGTGAAAGCTGCTGCTTATAATGCAGGGCTGCCCAAGTTGCATCTAAGAAGTGTTCATAAAGAGTTTCATGAAAATAGTATACAGGTTGTTGTTGCGACAGTAGCATTTGGAATGGGGATTGACAAATCAAATGTCAGAAGAATCATCCACTATGGTTGGCCACAGAGTTTGGAAGCATACTACCAAGAAGCTGGACGGGCTGGTCGAGATGGGAAGTTAGCAGATTGCATTCTATATGCAAACCTAGCAAGAAAGCCAAGACTTTTGCCAAGTCGTAGAAGTGAAGATCTAATAAAACAAGCATATGTCATGTTGTCTGATTGTTTCAGGTTTGCTTCAATGAATACATCTTTATTTGTCTTTTTTTCTTTTGTTTTATTTTAG 1917 0.3923 MNAMTNDNNNISSDQVIAEMLEMGFEYSNILEAIKVVGPSVPSAVEHIFNTTNNRDRETSNTQTYKLRSRNGNSLKKRTFPSSLQAPKSRVLNHYFQSIDKATKSKNNDVVAVDVEEHKEPSLPQIGVDLPGVAQDLDISSVWEQRVSYLLQKHFGFSSLKSFQKEALSTWVANKDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCLKLTSLGISACFLGSGQPDDTVEEKAMKGMYNIIYVCPETIKRLIQSLQKLAESRGIALFAIDEAHCISKWGHDFRPAYSQLSVLRENFSIGKLKSLKFDIPLMALTATATKRVREDILKSLCMSKETNVVLTSFFRSNLRFTVKHSRTSRASYEKDFHELIKVYGREQNIGGKKDFMSDDSDDVSNVSDASRSSDTDSNSSYDVDDNQDDYGDKDINIIHSGNTDHFIKAKELSIELLENDDGVSQSRDNSDATCGEFCVQPPPKELLDQGPTIIYVTTRKETLRIAKYLCKFGVKAAAYNAGLPKLHLRSVHKEFHENSIQVVVATVAFGMGIDKSNVRRIIHYGWPQSLEAYYQEAGRAGRDGKLADCILYANLARKPRLLPSRRSEDLIKQAYVMLSDCFRFASMNTSLFVFFSFVLF. 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06403 638 MobiDBLite consensus disorder prediction 389 426 - -
Seca8g06403 638 SMART helicmild6 501 582 IPR001650 -
Seca8g06403 638 PANTHER DNA HELICASE RECQ FAMILY MEMBER 140 621 - -
Seca8g06403 638 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 10 51 IPR015940 -
Seca8g06403 638 SUPERFAMILY UBA-like 13 54 IPR009060 GO:0005515
Seca8g06403 638 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 168 344 IPR014001 -
Seca8g06403 638 SMART ultradead3 156 361 IPR014001 -
Seca8g06403 638 NCBIfam RecQ family ATP-dependent DNA helicase 150 378 IPR004589 GO:0004386|GO:0006310
Seca8g06403 638 MobiDBLite consensus disorder prediction 400 418 - -
Seca8g06403 638 CDD DEXHc_RecQ 151 351 - -
Seca8g06403 638 Gene3D - 465 624 IPR027417 -
Seca8g06403 638 FunFam ATP-dependent DNA helicase 131 352 - -
Seca8g06403 638 FunFam ATP-dependent DNA helicase 466 591 - -
Seca8g06403 638 Pfam DEAD/DEAH box helicase 163 330 IPR011545 GO:0003676|GO:0005524
Seca8g06403 638 Pfam Helicase conserved C-terminal domain 485 581 IPR001650 -
Seca8g06403 638 Gene3D - 133 352 IPR027417 -
Seca8g06403 638 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 592 IPR027417 -
Seca8g06403 638 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 480 620 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06403 Seca-Chr8 158312730 158318772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06403 485 582 Eukaryotic Initiation Factors Gene Family AT5G11170 29.592 1.03e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06403 K10900 - gmx:100793222 825.854