Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06398 ATGGCGGGAACAACCGAAAACACATCGAAAGAGACCCTACGGGAATACGAAGAAGAAGCCGATGAACAAAGTTTCGAAGAGCTTGGATTGGACGCTCGCCTCGTTCGTGCCTTACTCAAGAAGGGAATCGAGAAATCCACTCCAATTCAGCGCGTCGCGATTCCACTGATTCTGGAAGGTAAGGATGTGGTTGCTCGAGCAAAGACGGGTTCTGGGAAGACCTTCGCATACCTTCTTCCTTTGCTTCAGAAACTGTTTACCGGTAATGTCGATAGGAAGAAGTTAGCACCCAATGCTTTCATTCTTGTTCCAACTCGCGAACTGTGTCAACAGGTGTATGCGGAGGTGTTGTCACTCCTCGATTTATGCAGAGTTCAACTGAAAGTTGTGCAGTTGAATAGTAATATGCTTGCCAATGACTTGCGGGCAGCTTTGGTTGGACCCCCTGATGTTTTAATCTCCACTCCTGCATGCATAGCCAAGTGCTTGTCTGGTGGCATACTTCAGGCGGCATCCATTAATGGTTCTCTTGAAACTCTAGTTCTTGATGAGGCAGATCTTCTATTATCATATGGGTATGAAGATGATATAAAAGCTTTTACACCTCATGTACCCAGAAGTTGCCAGTGTCTTCTTATGTCTGCAACATCAAGTGCTGATGTTGACAAACTAAAGAAGTTGATTCTACACAATCCCTTTATTTTGACTTTGCCTGAAGTGGGAAATCAGAAGGATGATGTCATCCCTAAAAACGTTCAGCAATTCTGGATCTCATGTCCTGCCAGTGATAAGTTGCTCCACATCCTTGCTGTGTTGAAGTTGGAGTTGGTCCAAAAGAAAGTATTGATATTCACTAATACTATAGACATGAGTTTCCGATTGAAACTATTCTTGGAAAAGTTTGGGATAAAGTCTGCTGTTTTAAATGCTGAGTTGCCACAGAACTCTCGTCTCCATATTCTTGAGGAATTCAATGCCGGCCTATTTGATTATCTTATTGCAACAGATGTCAGCCAGGCAAAGGAGAAGGATGAAGTGCCAAAGGAAAGTAATTTTGGATCACGGAAGTCTAGAAAACATTCTAAGCTAAAATTAGATTCTGAATTTGGAGTAGTAAGGGGAATTGATTTTAAAAATGTATACACGGTATGCAAGTCATCTCTTATGTTTTATCTCTTTATGACATGTTTATGTCTAATTTGCACCTGTTTGAAATTATTGTTCTGCATATGTTATTTTAGTAAGAGTTGTAAACTATGA 1260 0.4111 MAGTTENTSKETLREYEEEADEQSFEELGLDARLVRALLKKGIEKSTPIQRVAIPLILEGKDVVARAKTGSGKTFAYLLPLLQKLFTGNVDRKKLAPNAFILVPTRELCQQVYAEVLSLLDLCRVQLKVVQLNSNMLANDLRAALVGPPDVLISTPACIAKCLSGGILQAASINGSLETLVLDEADLLLSYGYEDDIKAFTPHVPRSCQCLLMSATSSADVDKLKKLILHNPFILTLPEVGNQKDDVIPKNVQQFWISCPASDKLLHILAVLKLELVQKKVLIFTNTIDMSFRLKLFLEKFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDVSQAKEKDEVPKESNFGSRKSRKHSKLKLDSEFGVVRGIDFKNVYTVCKSSLMFYLFMTCLCLICTCLKLLFCICYFSKSCKL. 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06398 419 MobiDBLite consensus disorder prediction 1 21 - -
Seca8g06398 419 Gene3D - 239 391 IPR027417 -
Seca8g06398 419 Gene3D - 2 237 IPR027417 -
Seca8g06398 419 SMART ultradead3 42 255 IPR014001 -
Seca8g06398 419 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 54 235 IPR014001 -
Seca8g06398 419 Pfam Helicase conserved C-terminal domain 263 387 IPR001650 -
Seca8g06398 419 Pfam DEAD/DEAH box helicase 47 224 IPR011545 GO:0003676|GO:0005524
Seca8g06398 419 CDD DEADc_DDX56 30 237 - -
Seca8g06398 419 PANTHER RNA HELICASE 17 384 - -
Seca8g06398 419 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 236 IPR027417 -
Seca8g06398 419 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 247 380 IPR027417 -
Seca8g06398 419 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 23 51 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06398 Seca-Chr8 158256351 158263209 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06398 24 337 Eukaryotic Initiation Factors Gene Family AT3G19760 26.752 1.16e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06398 K14810 - gmx:100800749 642.114