Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06397 ATGGATCAGGCAAGATCGACCAACGGCGAGGAGAATGTGGGGATTCCTGACGATTTGCGTTGCAAGAGGTCAGATGGGAAGCAATGGAGATGCACGGCCATGTCCATGCCCGACAAAACGGTGTGCGAGAAGCACTACATCCAAGCCAAGAAGAGAGCAGCAAATTCCGCCATGAGGGCTAACCTCAAGAAAGCTAAGAGGAAATCGTTGTCACTGGGCGAGTCTGATATTTATTTGGAGAGCAAAAGTGACGATTTTGACACGCCCCTTTCTGCTGCCATCAACAACAACCACTCTTCTTCCTCTGGGAAGAAGTTCTTGGATAAGGTTTCCAAGAACCAGTTTCGTTATACCCCTGAGTCTGAGACTAGAAGGGGTTCTTCAACTCGTCATGCTCCCAGGCCTAATGATGATTCCCCTGAACGTGTGGATGTGGATGTCCCTCCCTATGAAGAGAATTGGGTCTCCTACGATTCGCCCCCAGCTTCTGGAGTGGATTCAGCAAGGAAAAGGTCGCACAGGAGCTTGGATGCTAATGCCACGACTGAATATTCCGATGGAACCTCGGATTCTTCTCAAGACACTGGTGGCCAGACTTGCCATCAGTGCCGGAGGAATGACAGGGACAGAGTTACTTGGTGCCTTCGGTGTGATAGGAGAGGATACTGTGATAGTTGTATATCAACATGGTACTCAGACATTTCGTTGGATGAAATTCAGAGGATATGTCCTGCATGCCGTGGTATATGTAATTGTAAAATTTGCTTACGTAGTGATAATTCAATAAAGGTTCGGATACGAGAGATACCTGTACTAGATAAGTTACAGTATCTTCACTTGCTGCTCTCGTCAGTGCTTCCTGTGGTAAAGCAGATCCACCGGGAACAGTGCTTTGAAGTTGAACTTGAAAAGAAATTGCGTGGCTCTGAAATAGATCTTCTGAGGACAAAATTAAATGCAGATGAGCAGATGTGCTGTAATTTATGTAGGATACCCATTACTGATTATCATCGACGCTGTCCAAGTTGCTCATATGATTTGTGCCTTAATTGTTGTCGAGATCTTCGAGAAGCAACTGTACATCACAATAAAGAACCCCAAACAGAGCAAGCAAAAACTCCTGATCAAAACATATTATGTAAGTTTCCTCATTGGAGATCCAATGACAACGGAAGTATTCCATGCCCCCCTAAGGAGTATGGTGGCTGTGGTTATTCATCATTAAATTTAAGTAGGATTTTCAAAATAAATTGGGTTGCAAAATTGGTGAAAAATGTAGAGGAAATGGTTAGTGGCTGCAGAATTGGTAATGCTGATGGTCCAGCAGAAACTGGGTTGAATGCCCTCAGCCTTTGCCAATATTCTCATAGAGAGGATAGTGATGATAATTATCTTTATTGTCCAACATCTGAAGATCTCAAAACAGATGGGATTGGCAATTTTAGAAAGCACTGGAAAAATGGTGAACCCATTATCGTTAAGCAAGTATTTGATAGGTCATCCATGTCAAGCTGGGATCCAATGGCCATATGGCGAGGGATTCGAGAGACATCAGATGAGAAAATGAAAGAAGAAAACAGAATGGTTAAGGCCATAGATTGCTTAGATGGATCCGAGATTAATATTGAGCTTGGACAGTTCATGAAAGGATACTCTGAAGGACATATTCATGAAAATGGTTGGCCACAAATATTGAAGTTGAAGGATTGGCCTTCACCTAGTGCATCTGAAGAATTTCTATTGTACCAAAGACCTGAATTTATCAGCAAAGTGCCTTTACTTCAGTATATTCACTCCAAGTGGGGCCTTCTTAATGTTGCAGCTAAATTGCCCCATTACTCCTTGCAAAATGATGTAGGACCCAAGATCTATATATCTTATGGGATTAGTGATGAACTTGGTAGAGGAGATTCAGTGACTAATCTCCACTTCAATATGCGTGATATGGTGTACCTTTTGGTCCATACAAGTGAAGCAAAGCTGAAAGACTGGCAGAGAACTAAAATTGAAATGATACAAAAAGCTCATAAGGAATCTGAGGCGAAAGAATCTCGTGGGGATCCACAAATATGTTCCGAAGGGAGTTCACCTGATTCATCACTTAATACAAAAAATAATGAACTGGATTTGGAATCAAACCAAAATGATTCGATTATGGATCAAGGGTTTAACATTTATTCTAATGCTGAAGGGAATGTGGCCAAGTGTGAACTTCCGTTTAGACAAAATGGAGATGTCTCTGAGAAAACTCATCCTGGAGTTCTTTGGGATGTCTTTCGTCGGCAGGACATTCCAAAGGTGACTGAATATTTGAAAATGCATTGGAAGGAATTAGGGAAGTCAGATGATATAGTAAATGAATTTGTTACATGGCCTCTTTATGATGGAGCTGTTTTTCTTGACAGACACCATAAAAGAATGTTGAAGGAAGAATTTGGAGTGGAGCCGTGGTCATTTGAACAGAATTTAGGGGAAGCTATATTTGTTCCTGCTGGTTGCCCTTTCCAAGCAAGGAATGTTCAGTCCACTGTTCAGTTGGGCCTTGATTTCTTATCTCCAGAAAGCCTGGGGGAGGCTGTAAGATTGGCAGGGGAAGTCCGCTGTCTACCTAATGAACATGAAGCTAAGCTTCAAGTATTGGAGGTTGGGAAGATATCTCTTTATGCAGCAAGTTCAGCCATCAAAGAAGTTCAGAAACTTGTACTTGACCCAAAACTTGGTGCAGAGATCGGATATGGAGACCCTAATTTGACTGCAATGGTTTCTGAGAATTATGAGAAGATGGTTAAGCGGAGGCAGATTACCTGTGCTTGA 2814 0.4229 MDQARSTNGEENVGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRANLKKAKRKSLSLGESDIYLESKSDDFDTPLSAAINNNHSSSSGKKFLDKVSKNQFRYTPESETRRGSSTRHAPRPNDDSPERVDVDVPPYEENWVSYDSPPASGVDSARKRSHRSLDANATTEYSDGTSDSSQDTGGQTCHQCRRNDRDRVTWCLRCDRRGYCDSCISTWYSDISLDEIQRICPACRGICNCKICLRSDNSIKVRIREIPVLDKLQYLHLLLSSVLPVVKQIHREQCFEVELEKKLRGSEIDLLRTKLNADEQMCCNLCRIPITDYHRRCPSCSYDLCLNCCRDLREATVHHNKEPQTEQAKTPDQNILCKFPHWRSNDNGSIPCPPKEYGGCGYSSLNLSRIFKINWVAKLVKNVEEMVSGCRIGNADGPAETGLNALSLCQYSHREDSDDNYLYCPTSEDLKTDGIGNFRKHWKNGEPIIVKQVFDRSSMSSWDPMAIWRGIRETSDEKMKEENRMVKAIDCLDGSEINIELGQFMKGYSEGHIHENGWPQILKLKDWPSPSASEEFLLYQRPEFISKVPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISYGISDELGRGDSVTNLHFNMRDMVYLLVHTSEAKLKDWQRTKIEMIQKAHKESEAKESRGDPQICSEGSSPDSSLNTKNNELDLESNQNDSIMDQGFNIYSNAEGNVAKCELPFRQNGDVSEKTHPGVLWDVFRRQDIPKVTEYLKMHWKELGKSDDIVNEFVTWPLYDGAVFLDRHHKRMLKEEFGVEPWSFEQNLGEAIFVPAGCPFQARNVQSTVQLGLDFLSPESLGEAVRLAGEVRCLPNEHEAKLQVLEVGKISLYAASSAIKEVQKLVLDPKLGAEIGYGDPNLTAMVSENYEKMVKRRQITCA. 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06397 937 Gene3D Cupin 462 876 - -
Seca8g06397 937 ProSiteProfiles JmjC domain profile. 599 867 IPR003347 -
Seca8g06397 937 Pfam WRC 16 56 IPR014977 -
Seca8g06397 937 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 17 901 IPR045109 GO:0032454|GO:0033169
Seca8g06397 937 MobiDBLite consensus disorder prediction 94 202 - -
Seca8g06397 937 MobiDBLite consensus disorder prediction 675 707 - -
Seca8g06397 937 SMART cupin_9 580 867 IPR003347 -
Seca8g06397 937 MobiDBLite consensus disorder prediction 123 148 - -
Seca8g06397 937 MobiDBLite consensus disorder prediction 178 200 - -
Seca8g06397 937 ProSiteProfiles WRC domain profile. 15 59 IPR014977 -
Seca8g06397 937 MobiDBLite consensus disorder prediction 689 707 - -
Seca8g06397 937 Pfam JmjC domain, hydroxylase 801 846 IPR003347 -
Seca8g06397 937 MobiDBLite consensus disorder prediction 94 122 - -
Seca8g06397 937 SUPERFAMILY Clavaminate synthase-like 482 870 - -
Seca8g06397 937 ProSiteProfiles Zinc finger RING-type profile. 200 247 IPR001841 -
Seca8g06397 937 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 195 260 IPR018866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06397 Seca-Chr8 158244009 158250811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06397 16 56 GRF Transcription Factor Family AT3G13960 46.341 3.13e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca8g06397 JmjC 5.6e-06 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06397 K15601 - gmx:100801287 1580.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06397 8 158244009 158250811 Seca8g06397 8 158244009 158250811 ECH