Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06396 ATGTCAAACATCACTAGTTGTGATAGTGGGAGTTTCTCTACAGAGAATACCAGAGAAGATGCAGTTAAACAGCAACCTCCAGAGATACTTGGTCAGTTCCATAGTCCACATTCTCTCACTTCAACAACAATAACAACAAATAATAGCAATGGTTCCAACACAAATTTACAACCACCAGCACCTCTTAAGAAGAAAAGAAGCCTCCCAGGAAATCCAGATCCAAGTGCTGAAGTTATAGCTCTATCACCAAACACACTGTTGGCTACAAACAGGTTCGTATGTGAAATCTGCAACAAAGGATTTCAAAGAGACCAAAACCTTCAATTGCACCGGCGAGGACACAACTTGCCATGGAAGCTTAAACAGAGAACCACCACAGAAATTCGAAAGCGGGTTTATGTTTGTCCAGAACCTTCATGTGTCCACCACAACCCAGCAAGAGCACTAGGTGATCTTACTGGCATTAAAAAGCACTTTTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGATAAATGCTCCAAGAAATACGCTGTTCAATCTGACTGGAAAGCACACTCGAAAATCTGTGGTACAAGGGAATACAAATGTGACTGTGGAACCATCTTTTCCAGAAGAGACAGCTTCATTACACACAGAGCTTTCTGTGACGCATTGGCTGAGGAGAACAACAAAGCCAATGAAGGACAATTATCAAAGATGGGTTCAAATTTGCAATGTCAACCAAATATCCCAAACCTTGTTTCCTCATTACCAATCAATAGTACCAATCCCAACCCACAAATTGGTGGGACAACAGAATTCAACCATTCTGATCACAAGCATCCATTATCACTGCCTCATGATCTCATGCCAGTGCCTCCTGCAAAACCCTTCAACAACAACAACATTCCAGGAACTGTTTTCACTCGAAGCCTCTCATCCACCTCTTCTCCCTCTCTTCAACTGAGTTCAAACATCTTCGAGGAAAACGGGCTCCATTTAGCTGCAGGGTCACCGCACATGTCAGCAACGGCATTGCTGCAAAAAGCTGCACAAATGGGTGCAACAGTGAGTAGTAGCAGTGAAAAAAGTTTTGTCACAAACATGGCACCGCCACCATTTGGTATGGTGCAACAGCAACAGCAACAGCCAAATGGGCATGCCTTCATGAACAACCACTACATGCAGAATGGCCAACAGGGTATTTCTCCTGCTCAGTTCAGTTTCAATGCAAGTGGGATTGGTGGTGCAATGAATGGTGTGGATATGTTTAATGCTATATTGGATCAGAGTAAGGCGTTATCGAAGATCATAGAGCAGAACAGTCAAAGCAATGGTGGAACTGGAGGTCCAACAATTAACATTGGTGGAAGTAAAGGAAGTGGGGATGTAATGACTTTGGATTTGTTGGGGATAGGAGGAGGTGGTGGTGGTGGGAATGTGCATGCAAATTTCTATGGTGGTACCCAACAGGGGGAAAGTTGTTGTGAGGGTACGGAGATGGCAGTGCAAGTCAGGTTTGGGGGATGGAAGAACCGAATTGGCATAGCACAATGTTCGGGCGATCGACAAGAAAATTTCAAATTCGAAGATAAAATGAGGTCACCAGCGGAGGAATTTGCACCATTAGCCACGAAATTTCAGCGGCGGATTCTAGTGGGCGTTGGGACAGCTTCACTCGTAGCTGTGGAATTCATATACCCAGCAAATTGGGTTGGAGATCAGACGCTGCTGTACAGAGCTGCTAAGAAAAGAGAAATGGAACTATCATTGGATCCTCCTCCCCTGAATGTACGGACACGTTCTAATGTCACTGAACCCGTTGCGGCATTTGGTCCTCCCGGTTCCAATGGTGAACTCAATGTTAGTGTTATTGTCTCGCCCGTTGCTCAAGACTTCTCGATTGAAGCATTTGGAGGCCCAGAGGAGGTAGGTGAGGCTGTGATACGGACCATAACAGGATCAGGGGACGTGAAGGGCACATTGATAAAATCAAGTTTGAGGGAGGACCCTGTTCGAAATGCCAAATACTACAAGCTGGAGTTCAAAGTTGAGAGTCCCTCGTTTCGGCGACACAACGTTTCTGTCTGCTGCGCTCGTGGGGGTAGGCTTTTTACTTTAAATGCTCAGGCACCTGAATCGGCATGGCCAGGATTGAAGTCAGATTTCTATAGAATTGCTGATTCATTCACCCTCACAACTTAA 2187 0.4513 MSNITSCDSGSFSTENTREDAVKQQPPEILGQFHSPHSLTSTTITTNNSNGSNTNLQPPAPLKKKRSLPGNPDPSAEVIALSPNTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTTTEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKANEGQLSKMGSNLQCQPNIPNLVSSLPINSTNPNPQIGGTTEFNHSDHKHPLSLPHDLMPVPPAKPFNNNNIPGTVFTRSLSSTSSPSLQLSSNIFEENGLHLAAGSPHMSATALLQKAAQMGATVSSSSEKSFVTNMAPPPFGMVQQQQQQPNGHAFMNNHYMQNGQQGISPAQFSFNASGIGGAMNGVDMFNAILDQSKALSKIIEQNSQSNGGTGGPTINIGGSKGSGDVMTLDLLGIGGGGGGGNVHANFYGGTQQGESCCEGTEMAVQVRFGGWKNRIGIAQCSGDRQENFKFEDKMRSPAEEFAPLATKFQRRILVGVGTASLVAVEFIYPANWVGDQTLLYRAAKKREMELSLDPPPLNVRTRSNVTEPVAAFGPPGSNGELNVSVIVSPVAQDFSIEAFGGPEEVGEAVIRTITGSGDVKGTLIKSSLREDPVRNAKYYKLEFKVESPSFRRHNVSVCCARGGRLFTLNAQAPESAWPGLKSDFYRIADSFTLTT. 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06396 728 MobiDBLite consensus disorder prediction 1 74 - -
Seca8g06396 728 Pfam PsbP 604 725 IPR002683 GO:0005509|GO:0009523|GO:0009654|GO:0015979|GO:0019898
Seca8g06396 728 MobiDBLite consensus disorder prediction 1 20 - -
Seca8g06396 728 NCBIfam photosystem II reaction center PsbP 615 726 - -
Seca8g06396 728 SUPERFAMILY Mog1p/PsbP-like 558 726 IPR016123 -
Seca8g06396 728 MobiDBLite consensus disorder prediction 34 60 - -
Seca8g06396 728 Pfam Zinc finger, C2H2 type 92 114 IPR013087 -
Seca8g06396 728 SMART c2h2final6 168 188 IPR013087 -
Seca8g06396 728 SMART c2h2final6 133 163 IPR013087 -
Seca8g06396 728 SMART c2h2final6 92 114 IPR013087 -
Seca8g06396 728 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 46 482 IPR031140 -
Seca8g06396 728 Gene3D Classic Zinc Finger 147 226 - -
Seca8g06396 728 FunFam protein indeterminate-domain 12-like 71 139 - -
Seca8g06396 728 Gene3D Mog1/PsbP, alpha/beta/alpha sandwich 554 726 - -
Seca8g06396 728 Gene3D Classic Zinc Finger 72 137 - -
Seca8g06396 728 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 114 IPR013087 -
Seca8g06396 728 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Seca8g06396 728 FunFam protein indeterminate-domain 5, chloroplastic-like 146 225 - -
Seca8g06396 728 SUPERFAMILY beta-beta-alpha zinc fingers 91 188 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06396 Seca-Chr8 158238937 158243906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06396 49 355 IDZ Gene Family AT3G50700 56.364 7.50e-115 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca8g06396 PsbP 4.6e-22 CL0619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06396 - - gmx:100785295 736.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06396 8 158238937 158243906 Seca8g06396 8 158238937 158243906 ECH