Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06395 ATGGAAGGTGAGCAAGATAGGGCTTTACCCATTGCAAATGTGGGTAGAATAATGAAGCAAATCCTTCCTCCAAGTGCAAAGATCTCGAAAGAAAGCAAGCAAGTAATGCAAGAATGTGTAACAGAGTTCATAAGTTTTGTGACGAGTGAAGCATCTGACAAGTGTCACAAGGAGAATCGCAAGACCGTTAATGGGGATGACATCTGTTGGGCTCTTAGTTCCTTAGGGTTTGATAACTTTGCTGAAGCCATTGGAAGGTACTTGCATAAATACAGGCAAGCTGAAAGGGAGAAATTGAAGATCAATCACAATGATAGTGCCAAAGAAAAGTATGAAGAAGGAGCGACAAGAACCACCAAACGTCAGAAGCAAACTCAAATTAATTAA 387 0.4057 MEGEQDRALPIANVGRIMKQILPPSAKISKESKQVMQECVTEFISFVTSEASDKCHKENRKTVNGDDICWALSSLGFDNFAEAIGRYLHKYRQAEREKLKINHNDSAKEKYEEGATRTTKRQKQTQIN. 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06395 128 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 72 IPR003958 -
Seca8g06395 128 SUPERFAMILY Histone-fold 5 120 IPR009072 GO:0046982
Seca8g06395 128 FunFam Nuclear transcription factor Y subunit B-6 1 113 - -
Seca8g06395 128 MobiDBLite consensus disorder prediction 99 119 - -
Seca8g06395 128 ProSitePatterns NF-YB/HAP3 subunit signature. 39 55 IPR003956 GO:0005634|GO:0006355|GO:0043565
Seca8g06395 128 Gene3D Histone, subunit A 1 128 IPR009072 GO:0046982
Seca8g06395 128 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 120 IPR027113 GO:0001228|GO:0006355|GO:0016602
Seca8g06395 128 MobiDBLite consensus disorder prediction 99 128 - -
Seca8g06395 128 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Seca8g06395 128 PRINTS CCAAT-binding transcription factor subunit A signature 36 54 - -
Seca8g06395 128 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06395 Seca-Chr8 158212300 158212686 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06395 4 127 CCAAT-HAP3 Transcription Factor Family AT1G09030 65.873 3.06e-57 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Seca8g06395 CBFD_NFYB_HMF 4e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06395 K08065 - gmx:100815151 191.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06395 8 158212300 158212686 Seca8g06395 8 158212300 158212686 ECH