Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06389 ATGCTGGGTTCAATAGCGGATAGAGGACAGGGGAGCAATGCAGTGGCAGCACTGACAGGACCCGTTTTTGTTCCTAAGCGGTTTGTTTGGCCTTATGGGGGAAGAAAGGTGTTTCTAATTGGTTCTTTTACCAGATGGTCAGCAGTTATACCCATGTCTCCAACCGAAGGCTCCCCGACTGTATTTCAAGCTTTGTGCAGCTTAACACCGGGATATCATCAGTACCTATTTAATGTGGATGGTCAGTGGCGGCATGATGAGCAGCAGCCATTTGTAAGTGGAAACTATGGGACAATGAATACTCTTTATGTATTAAAACAACCAGATATTTTACCTACCATCTTAAGAGCTGAAACAGCTGGTAGATCCGACATGGAAGTTGACAATAATGTCTCTGGCCATGTGGTAAGTTTCTTCTCCCTTCCCATCTTTGTAACTGTTGCATATATTCTAGAAGCTAATCCAAAGATGTCAGAGTCTGATCTACAGGCCACTCGCCACCATATATCTACATTCTTGTCTACAAACACTGCTTATGAGTTGCTTCCTGAGTCAGGGAAGGTTATTGCCTTGGATATAGATTTATCAGTCAATCAAGCGTTCAATGCTCTTTATGAAGAGGGAGTATCTATGGCTCCTCTATGGGATTCTCACAGGTGCCAGTTTGTTGGAATGTTTAGCACAATGGACTTCATTCAAATAGTGAAAGAGATGGGGAATTTTGTATCAAACTTGACTGACCAACAACTTGAGACACATACTATAGCAGCATGGAGAGAGAGAAAATCACAGCAATGCGGAACTGATAATAATGCGAGAACATATCCTTGGCGTTTTGTTGATGCTGGGCCACATGAGTGTCTAAAAGATGTCGCTTTGAAAATTTTGCAAAACAAGGTGGCAACAGTTCCTATTATCCATTCTTCTTCAGAGGATGGTTCATTTCCTGAGCTGCTACACCTTGCTTCCCTCTCAGAAATACTAAAATGTATATGCAGGTATTTTAAGCACTCTTCTGGTTCTTTGCCCATTCTTCAACTGCCAATTGGTTCAATACCTTTGGGTACGTGGGTGCCAAAAGTGGGGGAATCCAATAAAAAGCCACTTGCTATGCTAAGGCCAAATGCTTCTATTGGTGCTGCTCTATCTCTGTTGATTCAAGCTGAAGTTAGCTCAATACCAATTGTTGATCTCAGTGATTCATTACTTGATATATATTCAATTAGTGATATTACTGCGTTGATTCAAAATAAGGCACATGCTAGTATGAATCTGGATGAATGTAGTATCCATCAGGCACTGCTTTTGGGACCATATGCAAATTATCCTCCGTGGCATGGCCGGAGATATCATATATGTTTTAGGTCTGATCCATTGCTCAACGTGATGGAGCGGCTGGCTATTCCTGGTGTTAGACGACTTGTGGTTGTGGATGGTGCCAGCAGGCGCGTGGAAGGGATCGTTTCCTTAAGTGACGTGTTCAGGTTCCTGTTAGGCTAG 1500 0.4267 MLGSIADRGQGSNAVAALTGPVFVPKRFVWPYGGRKVFLIGSFTRWSAVIPMSPTEGSPTVFQALCSLTPGYHQYLFNVDGQWRHDEQQPFVSGNYGTMNTLYVLKQPDILPTILRAETAGRSDMEVDNNVSGHVVSFFSLPIFVTVAYILEANPKMSESDLQATRHHISTFLSTNTAYELLPESGKVIALDIDLSVNQAFNALYEEGVSMAPLWDSHRCQFVGMFSTMDFIQIVKEMGNFVSNLTDQQLETHTIAAWRERKSQQCGTDNNARTYPWRFVDAGPHECLKDVALKILQNKVATVPIIHSSSEDGSFPELLHLASLSEILKCICRYFKHSSGSLPILQLPIGSIPLGTWVPKVGESNKKPLAMLRPNASIGAALSLLIQAEVSSIPIVDLSDSLLDIYSISDITALIQNKAHASMNLDECSIHQALLLGPYANYPPWHGRRYHICFRSDPLLNVMERLAIPGVRRLVVVDGASRRVEGIVSLSDVFRFLLG. 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06389 499 Gene3D Immunoglobulins 22 105 IPR013783 -
Seca8g06389 499 Pfam Glycogen recognition site of AMP-activated protein kinase 24 109 IPR032640 -
Seca8g06389 499 SUPERFAMILY CBS-domain pair 165 337 IPR046342 -
Seca8g06389 499 SMART cbs_1 368 416 IPR000644 -
Seca8g06389 499 SMART cbs_1 187 236 IPR000644 -
Seca8g06389 499 SMART cbs_1 449 498 IPR000644 -
Seca8g06389 499 FunFam Sucrose nonfermenting 4-like protein 21 106 - -
Seca8g06389 499 ProSiteProfiles CBS domain profile. 181 242 IPR000644 -
Seca8g06389 499 Pfam CBS domain 367 415 IPR000644 -
Seca8g06389 499 Pfam CBS domain 449 498 IPR000644 -
Seca8g06389 499 SUPERFAMILY CBS-domain pair 361 498 IPR046342 -
Seca8g06389 499 CDD E_set_AMPKbeta_like_N 27 100 - -
Seca8g06389 499 SUPERFAMILY E set domains 24 103 IPR014756 -
Seca8g06389 499 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 159 497 - -
Seca8g06389 499 Gene3D - 157 338 IPR046342 -
Seca8g06389 499 Gene3D - 339 498 IPR046342 -
Seca8g06389 499 ProSiteProfiles CBS domain profile. 364 422 IPR000644 -
Seca8g06389 499 ProSiteProfiles CBS domain profile. 446 499 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06389 Seca-Chr8 158139390 158149289 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06389 - - gmx:100790062 659.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06389 8 158139390 158149289 Seca8g06389 8 158139390 158149289 ECH
Seca8g06389 8 158139390 158149289 Seca2g05317 2 139726048 139734985 PCT