Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06387 ATGGTACCAAGAAGGAAATCTACTAGTGTGAATAAGCGGTTTTCAAATTCAAATGACTTTTTTCCCGAGAAAGATGGAGTTAACTCAAATATAAACAAGCAACGAAAGAAAAGGTTGACTGATAAATTGGGACCTCAGTGGAGTAAGGAGGAACTAAAGCGATTTTATGAAGCATATAGGAAGTATGGGAAAGAGTGGAAAAAGGTGGCTACCGTTGTATGTGATAGATCCGTTGAAATGGTGGAAGCTCTATACAATATGAATCGGGCATACCTTTCTCTGCCAGAGGGGACAGCTTCTGTTGTTGGCCTCATAGCAATGATGACAGATCATTATAATGTCCTGGAAGGGAGTGATAGTGAAAGGGAGAGCAATGATGCACCAGGATCTCGAAAACCTGTGAAACGAAAGCGTGAAAAAGTTCAGCTAAGTGTTTCAAAAGATCCTGTCCAGTCTCAGTCAATTGCTTCCTCCGATGGTTGCCTCTCTCTACTGAAGAAGAGATGCATTGATGGTATCCAGCCTCGGGTTGTTGGGAAAAGGACACCCCGTGTCCCAGTTTACTACTCTTATAAGAAGGATGATAGGGAAAATTATATTTCACCTAATAAAAGAAGCCTGAAGTCAACTGTTGATGCTAATGATGATGAAGTTGCAAATGTGGCTTTGGCATTAACCAAGGCTGCACAGAGAGGGGGCTCTCCCCTAGTTTGTCAGACACCATACAGAAGAGCAGAGCAACAGTCTTCTCCTGTACCGAGTGGGGAAAAAATGGGCCAAATGTCAGAGACAGCTCATGCCAAGTTTCATGATGTCTCTGTTGATGAAGAGTTTGTGGAAGGCAGTATAGAAAGCAGGGAAACTGAAAATGGAGAATATGCCAGAGATACTAGTTCCTTGATGGACATGGAAGGCATGGGCACTGTTGAGGTTCTTCAGAAGGGGGAAAAATTTTACAGAAAGAAAGAGAGTGTGGGAAATGATGCAAACGATAAGTTTGATGATGGTGGGGAAGCATGTAGTGGCACCGAAGGAGTTAGGTTTAGTTCTTTGAAGGAAAAGGTTTATATTGAGGCTAATAATGAAAAACTTGAGCAATTCTCTCTAAAACATCAGAGGAAAAGAAGCAAGAAACTCTTCTTTGGAGGTAAGTCTGTCACTAGACATATCTGTGCAAATGAAATTCCTGCCTTGAATGCCTTGCAAACTTTGGCTGATCTGTCTCTAATGATGCCAACATCTAAAGTAGAATCTGAGTCATCTGTCCAGTTGAAGGGAGAAAGAATGGCTGTTGATAAAGATGATAAGTCTGCCTTACCTGAAGAAACATCAACAAGTCATAACAGATATAAACATAAACTGTGCGTCGTGCCTGGAGTTGAGGCTGCAGCTCCCAAAAAATCTCAACTCAGAAAGGAATCAGGAATTGATACTAATGCTCTGTCTGAATCAAAAGAGAAGCTTCCCCTTGTTGATAGAACATGGAAAAGAAAGCAGAAGTCCATGATTTCAAAGGCTGTAGATGATGAGAGCAAACCAGTGATTAAAGGAAAACTCACTGATCAGGTTTTTACCCTGCCAAAACAATTGAAGACAGTCAAATCATCAGAGAGTTCCCTGTGTAGTGATCAGAAAGATTTGACAGTATCAACTGCAGAAGTTCCACTTTTGAGTGAAGTTAGTTTACCAACTATCCAAAGAAGTAGACGAAAGAGGATTATTCAGAGAACATCCATGCCTAAAGAGAAGTCTTCTGAGAACATATTGAAAAGTCAACCTAACAAGTACTCTATTACCCTAAGGGGAAAGCTTTCTAGTTTCCTGTCATCTTATATGGTTCGCAGATGGTTTACTTTTGAATGGTTTTATAGTGCAATAGATTATCCATGGTTTGCCAAAAGGGAATTCATGGAATACTTAAATCATGTTGGACTAGGGAATATCCCAAGGCTAACTCGTGTTGAGTGGAGTGTCATAAAAAGTTCCCTTGGCAAACCTCGCAGGTTTTCTGAACAATTCCTAAATGAAGAAAGACAAAAAGTTGAACAGTATCGAGAATCAGTGAGGAAACATTATACTGAACTGTGGACTGGTATTAGAGATGGACTTCCAACAGATTTAGCTAGACCATTATGCGTTGGACAACGAGTAATTGCCATTCACCCAAAAACAAGAGAGATTCATGATGGTAGTGTGCTTACAGTTGACCATGACAAATGCAGGATTCAGTTTGACCATCCTGAATTAGGCGTTGAATTTGTCATGGATATTGATTGCATGCCTTTGAATCCATTAGATAATATGCAAGACGCTCTGAGGGGGCAGATTAATGGAAATTCAAGTTTTGGGGGATGCGAAATGCGTGCTTCACCTCAGAAGGGGGATGTTAACTATGCAATTGTCCAGGCAAAGGTTGCTACCATTGATAACCTCTGCCCACAAACAGCTTGTGCTCAACCGTGTAAAGTTACACACTATCAAGCTAAGGAAGCTGATATACTTGCACTTTCTGAACTGAAGCGTGCTCTGGATAAAAAGGAGACATTATTGATGGAACTTCGAAATGCAAATAATGGCATACTGGAAAACCAAAATGGCATAGAATGCTTAAAAACTTCCGAGGCGTTCAGGAAGCATTTCGCCACGGTACTTGTAGAGCTAAAGGAAGCCAGTGGACAGGTTTCTGATGCTATGCTTCAATTGAGGCAACGCAATACTTACACAGGAAACTCTTCGCCACCATGGATGAAGCCTCAATCAAATTTTAATGTTCATGATGACCTTCCCGGTGTGTTGGATAGTTCTCTAGCACAGAAGTTTGGATCAACTGTCATTGAAATTATTAAAGGATCCAGGCTAAGGGCACATGCAATGGTGGAAGCTGCATTTCAGGCATTGTCTTTGATAAAAGAAGGTGAAGATGCTTTCACAAGGATTGGGCAGGCCCTGGATTGTATTGATTATCAGCGGTTGGCCTCCAAGTCGAGGTTACCTGTGATCAGGTCCCAAGACCAAGTGAATGGCAGTTTTTATTATCATAATCAGTCAACTAGCTGTGCATCAGAGGCTTTACTCAATGATGCATCTGGTCCAAAACTGCTTAATGATTCCAACAAAGTTAATGCTGAAATTCCATCAGAGCTCATCACTTCATGCGTTGCTACATTAATCATGATACAGACTTGTTCTGAACGGCAATACCCTCCAGCTGATGTGGCCCAGATATTAGATTCTGCCGTTACCAGCCTGCATCCGTGCTGTCCTCAAAACCTTCCTATTTATAGAGAAATTCAAATGTGCATGGGAAGAATTAAGACCCAGATTTTAGCTCTCATCCCTACTTGA 3345 0.4126 MVPRRKSTSVNKRFSNSNDFFPEKDGVNSNINKQRKKRLTDKLGPQWSKEELKRFYEAYRKYGKEWKKVATVVCDRSVEMVEALYNMNRAYLSLPEGTASVVGLIAMMTDHYNVLEGSDSERESNDAPGSRKPVKRKREKVQLSVSKDPVQSQSIASSDGCLSLLKKRCIDGIQPRVVGKRTPRVPVYYSYKKDDRENYISPNKRSLKSTVDANDDEVANVALALTKAAQRGGSPLVCQTPYRRAEQQSSPVPSGEKMGQMSETAHAKFHDVSVDEEFVEGSIESRETENGEYARDTSSLMDMEGMGTVEVLQKGEKFYRKKESVGNDANDKFDDGGEACSGTEGVRFSSLKEKVYIEANNEKLEQFSLKHQRKRSKKLFFGGKSVTRHICANEIPALNALQTLADLSLMMPTSKVESESSVQLKGERMAVDKDDKSALPEETSTSHNRYKHKLCVVPGVEAAAPKKSQLRKESGIDTNALSESKEKLPLVDRTWKRKQKSMISKAVDDESKPVIKGKLTDQVFTLPKQLKTVKSSESSLCSDQKDLTVSTAEVPLLSEVSLPTIQRSRRKRIIQRTSMPKEKSSENILKSQPNKYSITLRGKLSSFLSSYMVRRWFTFEWFYSAIDYPWFAKREFMEYLNHVGLGNIPRLTRVEWSVIKSSLGKPRRFSEQFLNEERQKVEQYRESVRKHYTELWTGIRDGLPTDLARPLCVGQRVIAIHPKTREIHDGSVLTVDHDKCRIQFDHPELGVEFVMDIDCMPLNPLDNMQDALRGQINGNSSFGGCEMRASPQKGDVNYAIVQAKVATIDNLCPQTACAQPCKVTHYQAKEADILALSELKRALDKKETLLMELRNANNGILENQNGIECLKTSEAFRKHFATVLVELKEASGQVSDAMLQLRQRNTYTGNSSPPWMKPQSNFNVHDDLPGVLDSSLAQKFGSTVIEIIKGSRLRAHAMVEAAFQALSLIKEGEDAFTRIGQALDCIDYQRLASKSRLPVIRSQDQVNGSFYYHNQSTSCASEALLNDASGPKLLNDSNKVNAEIPSELITSCVATLIMIQTCSERQYPPADVAQILDSAVTSLHPCCPQNLPIYREIQMCMGRIKTQILALIPT. 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06387 1114 Pfam Myb-like DNA-binding domain 46 82 IPR001005 -
Seca8g06387 1114 PANTHER LIN-9 1 1114 IPR010561 GO:0006351|GO:0017053
Seca8g06387 1114 SMART sant 43 91 IPR001005 -
Seca8g06387 1114 MobiDBLite consensus disorder prediction 116 153 - -
Seca8g06387 1114 SUPERFAMILY Homeodomain-like 45 91 IPR009057 -
Seca8g06387 1114 MobiDBLite consensus disorder prediction 8 28 - -
Seca8g06387 1114 SMART DIRP_2 622 723 IPR033471 -
Seca8g06387 1114 MobiDBLite consensus disorder prediction 116 144 - -
Seca8g06387 1114 Pfam DIRP 621 722 IPR033471 -
Seca8g06387 1114 Coils Coil 836 859 - -
Seca8g06387 1114 Coils Coil 674 694 - -
Seca8g06387 1114 MobiDBLite consensus disorder prediction 418 445 - -
Seca8g06387 1114 ProSiteProfiles SANT domain profile. 42 79 IPR017884 -
Seca8g06387 1114 Gene3D - 5 99 - -
Seca8g06387 1114 MobiDBLite consensus disorder prediction 1 28 - -
Seca8g06387 1114 CDD SANT 47 81 IPR001005 -
Seca8g06387 1114 MobiDBLite consensus disorder prediction 426 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06387 Seca-Chr8 158098157 158123839 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca8g06387 DIRP 4.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06387 - - gmx:100816217 1621.29