Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06363 ATGGATCATCATGGGCATGGCCAGAATCCATCTATGGGGGTTGTTGGTAGTGGACCACAGCTGACATATGGTTCTAACCCATACCAACCAAACCATATGACTGGTTCACCTGGGATGGTTGTTTCATCAGGTGGGACTATTCAATCCACTGGTCAACCAGCTGGAGCTCAGCTGGGACAACATCAACTTGCTTATCAGCATATTCATCAGCAACAACAGCAGCAACTTCAGCAACAGCTCCAAACCTTTTGGGCAAATCAATATCAAGAAATTGAGAAAGTAACTGATTTCAAGAACCACAGCCTTCCCTTGGCAAGGATCAAGAAGATTATGAAGGCTGATGAGGATGTTAGAATGATCTCAGCTGAGGCACCCGTCGTGTTTGCAAGGGCATGTGAAATGTTCATATTAGAGTTAACCTTGCGTTCTTGGAATCACACTGAAGAGAACAAAAGGAGGACACTTCAGAAAAATGATATTGCAGCAGCCATCACAAGAACTGATATCTTTGATTTCTTGGTTGACATTGTGCCTCGGGAGGACTTGAAAGATGAAGTGCTTGCATCAATACCAAGAGGAACAATGCCTGTTGCAGGGCCTGCTGATGCACTTCCTTATTGCTATATGCCACCTCAACATGCACAGCAAGTTGGAAATGCTGGTGTCATGATGCCTAAGCCTATGATGGACCCAAATATATATGCTCAGCAGCCTCATCCCTACATGGCACCACAAATGTGGCCACAACCACCAGAGCAACAACAATCATCTCCAGATCATTAG 783 0.4496 MDHHGHGQNPSMGVVGSGPQLTYGSNPYQPNHMTGSPGMVVSSGGTIQSTGQPAGAQLGQHQLAYQHIHQQQQQQLQQQLQTFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVAGPADALPYCYMPPQHAQQVGNAGVMMPKPMMDPNIYAQQPHPYMAPQMWPQPPEQQQSSPDH. 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06363 260 MobiDBLite consensus disorder prediction 1 37 - -
Seca8g06363 260 FunFam Nuclear transcription factor Y subunit gamma 66 179 - -
Seca8g06363 260 Gene3D Histone, subunit A 63 179 IPR009072 GO:0046982
Seca8g06363 260 MobiDBLite consensus disorder prediction 13 37 - -
Seca8g06363 260 SUPERFAMILY Histone-fold 69 173 IPR009072 GO:0046982
Seca8g06363 260 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 64 210 - -
Seca8g06363 260 MobiDBLite consensus disorder prediction 235 260 - -
Seca8g06363 260 Pfam Core histone H2A/H2B/H3/H4 62 164 IPR007125 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06363 Seca-Chr8 157890081 157892572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06363 1 247 CCAAT-HAP5 Transcription Factor Family AT1G08970 61.694 1.81e-88 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Seca8g06363 CBFD_NFYB_HMF 4.6e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06363 K08066 - gmx:100527803 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06363 8 157890081 157892572 Seca2g05342 2 139904313 139907231 ECH
Seca8g06363 8 157890081 157892572 Seca8g06363 8 157890081 157892572 ECH
Seca8g06363 8 157890081 157892572 Seca2g05342 2 139904313 139907231 PCT