Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06355 ATGAACAACCCACACACCTTCTACCTAAATGGCGGGACAATCCCCCTTTGTTTCCTCCTCCTCCTTCTCTCCCATGGCTTCCCCTTCGCCGGAGCACAAACTACGAACACCCAAGACGATTCGTATTACAACCGCGTCAGCCCCTCCATGGCCATCATAATCGTCATACTCATCGCCGCTCTCTTCCTCATGGGCTTCTTCTCCATCTACATCCGCCGCTGCGCCGATTCCCCCTCCAGCAGTGTCCGCTACATCACCGGCGCCGCCGGACGCTCCCGCCGGGCACAGCGAGGCCTCGACCGCGCCGTCATCGACACGTTCCCCACTTTCGAATATTCCGCAGTGAAGATTCACAAGATTGGAAAAGGCGCTCTGGAATGCGCGGTGTGTTTAAACGAATTCGAGGAGACCGAAACGCTGCGTTTGATCCCAAAGTGTGACCACGTGTTCCATCCAGAGTGCATCGACGAGTGGCTTGCTTCCCACACCACTTGCCCCGTTTGCCGAGCCAACCTCGTTCCCCAACCTGGCGATTCAGTTCACGGAATCCCGATTCTGAACGACGATCCGCAAGAAGATATTGAGGCACAGAACGACGCCGTTGAACCGGCTCAGGAGCAGCAAAATGCGGACGCTGCTGCTCGAGACTCGAAGGAACCGGAATTGATGAGCTTCAACATGACGCTGAACCGGAACCGCACGAAGGGATCGCGGTCGAGCCGGACGCGAAGGTTCCCGCGGTCTCACTCGACCGGTCATTCGTTGGTCCAACCGGGTGAGGACACTGAACGGTTCACTTTGAGACTTCCCGTGGAAGTGAGGAAGCAGATACTACTGAACCCGGAATTGCATCGGGCTAGAAGCTTGGTTGTGTTGCCTAGAGAAAGTAGTTCACGGCGGGGATATAGAGCCGGTGGAGAGGGAAGTAGCAGAGGGAGGAATTCAAGGCGATTGGACAGGGGTTTCAAATCAGACCGGTGGGTTTTCACCATGGCGCCGCCGTTCCTAGTTAGAGCGTCGTCGATTAGGTCGCCGAGGGTAGCTAATAGCGTCGGGGAAGGCACCTCCGCTTCTACACCGCCGGCGGCGGCGGCGGTGGAAGTGAGCTCTGCGCGCCCTCCGGTTTAA 1128 0.5745 MNNPHTFYLNGGTIPLCFLLLLLSHGFPFAGAQTTNTQDDSYYNRVSPSMAIIIVILIAALFLMGFFSIYIRRCADSPSSSVRYITGAAGRSRRAQRGLDRAVIDTFPTFEYSAVKIHKIGKGALECAVCLNEFEETETLRLIPKCDHVFHPECIDEWLASHTTCPVCRANLVPQPGDSVHGIPILNDDPQEDIEAQNDAVEPAQEQQNADAAARDSKEPELMSFNMTLNRNRTKGSRSSRTRRFPRSHSTGHSLVQPGEDTERFTLRLPVEVRKQILLNPELHRARSLVVLPRESSSRRGYRAGGEGSSRGRNSRRLDRGFKSDRWVFTMAPPFLVRASSIRSPRVANSVGEGTSASTPPAAAAVEVSSARPPV. 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06355 375 CDD RING-H2_EL5-like 126 169 - -
Seca8g06355 375 MobiDBLite consensus disorder prediction 293 317 - -
Seca8g06355 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 174 IPR013083 -
Seca8g06355 375 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
Seca8g06355 375 MobiDBLite consensus disorder prediction 348 375 - -
Seca8g06355 375 PANTHER RING FINGER DOMAIN-CONTAINING 35 183 - -
Seca8g06355 375 MobiDBLite consensus disorder prediction 198 261 - -
Seca8g06355 375 SMART ring_2 127 168 IPR001841 -
Seca8g06355 375 FunFam E3 ubiquitin-protein ligase ATL6 88 175 - -
Seca8g06355 375 Pfam Ring finger domain 126 169 IPR001841 -
Seca8g06355 375 SUPERFAMILY RING/U-box 118 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06355 Seca-Chr8 157833129 157834256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06355 12 375 Rapid Response to Elicitors AT3G05200 43.750 1.11e-94 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06355 K10664 - gmx:100810865 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06355 8 157833129 157834256 Seca8g06355 8 157833129 157834256 ECH
Seca8g06355 8 157833129 157834256 Seca2g05349 2 139975819 139976925 PCT