Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06352 ATGTGTTTGCCTGAGGGAGAGAGAGATAGAGAGAGAGCCATGGCACTTGAAGCAGTGGTATATCCTCAAACACAAGACCCTTTTGGCTATGGACTCAAAGACTTCTACAACTGCAACTTGCTAGCTGGAAATTGGAGCTATGAAGACCTCAACCTTGAAAAAGAAGAAGATCAAGGATCTATCACTTTTCTAGAGAACCAAACAGAGAATTATCCTTATGGAGATTGGAATACCTCATCAATGTTACAACCCCACTTCAATAATGATCTTCAAGACCCCAACAACACACAAAACTTAGATACCCCAACTCGTCCTAAGAGGCGCAGAGCCAAAAGCAGAAAGAATAAGGAAGAAATTGAGAATCAAAGAATGACTCACATTGCTGTGGAGAGAAATAGAAGAAAACAGATGAATGAGTATCTTTCTGTTCTTCGGACTCTAATGCCAGACTCTTATATCCAAAGGGGTGATCAAGCTTCTATAATTGGAGGGGCTATTAACTTTGTTAAAGAGCTTGAGCAGAGGCTGCACTTTCTTGGTGCTCAGAAAGAAGTAGAAGGGAAACCTGATGCTGGTGTTGCAGCACCAAGCATGCCCTTTTCTGAGTTTTTCTCCTTTCCTCAGTATTCAACAAATGCTAGTAGCAGTGATAATTCTGGAGCCATTGGTGAACATGTAGGTGGGGTTCAATCTGGCATTGCTGATATAGAAGTGACAATGGTGGAAAGCCATGCAAATCTCAAAATAAGATCTAAGAAGAGGCCAAAACAGCTCTTGAAAATGGTCACTGGTTTGCATAGCATGCGCCTCACAATTTTGCACCTAAATGTTACCACCACTGGTGAAACTGTCCTCTACTCTCTCAGTGTTAAGGTAGAAGATGATTGCAAGTTGGGATCAGTGGATGATATAGCTGCAGCTGTGTACCAGATGCTGGATAGGATTCAACAAGAGGCAATGCTGAATTAA 969 0.419 MCLPEGERDRERAMALEAVVYPQTQDPFGYGLKDFYNCNLLAGNWSYEDLNLEKEEDQGSITFLENQTENYPYGDWNTSSMLQPHFNNDLQDPNNTQNLDTPTRPKRRRAKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRTLMPDSYIQRGDQASIIGGAINFVKELEQRLHFLGAQKEVEGKPDAGVAAPSMPFSEFFSFPQYSTNASSSDNSGAIGEHVGGVQSGIADIEVTMVESHANLKIRSKKRPKQLLKMVTGLHSMRLTILHLNVTTTGETVLYSLSVKVEDDCKLGSVDDIAAAVYQMLDRIQQEAMLN. 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06352 322 Gene3D - 106 186 IPR036638 GO:0046983
Seca8g06352 322 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 121 185 IPR036638 GO:0046983
Seca8g06352 322 Coils Coil 47 67 - -
Seca8g06352 322 SMART finulus 127 178 IPR011598 GO:0046983
Seca8g06352 322 Pfam Helix-loop-helix DNA-binding domain 122 173 IPR011598 GO:0046983
Seca8g06352 322 PANTHER MAX DIMERIZATION, MAD 82 319 - -
Seca8g06352 322 CDD bHLH_AtFAMA_like 124 197 - -
Seca8g06352 322 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 121 172 IPR011598 GO:0046983
Seca8g06352 322 MobiDBLite consensus disorder prediction 82 118 - -
Seca8g06352 322 MobiDBLite consensus disorder prediction 82 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06352 Seca-Chr8 157782658 157784444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06352 14 292 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 47.771 5.89e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca8g06352 HLH 6.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06352 - - pvu:PHAVU_007G181900g 474.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06352 8 157782658 157784444 Seca8g06352 8 157782658 157784444 ECH
Seca8g06352 8 157782658 157784444 Seca2g05351 2 140017828 140019950 PCT