Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06346 ATGCCAAAAATGGCTTTTTTTCTGCCACCACTTTCTTTTTCAACTTCATATCTTAGCACAAGCACTATTGTTGCACTCTCTGTATTTTTCACACTCCTCTGTGCTTGCATTATCATTGGCCATCTTCTGGAAGAGAATCGGTGGGCCAATGAATCCATCACTGCCCTCCTTCTGGGGTTGTGTTCTGGGGTGGTGGTGTTGCTGGTGACCAAGTTCCATAGTACCAAGATTCTAATATTCAGTGAAGATTTATTCTTCCTTTACTTGCTTCCACCAATCATTTTCAATGCCGGTTTCCAAGTCAAGAAGAAGCAGTTCTTCAAGAATTTCACAATTATACTGCTGTTTGGGGTCCTCGGAACAGTGATTTCATTCTGTCTCATATCTGTAGGTGCCTTTCTGCTCACTAATAGGATTGGCATAGCTAACCTGGGCATAAAAGATCACCTAGCTATTGGTGCCATATTGTCAGCAACTGACTCAGTTTGTACATTGCAGGTTCTAAGCCAAGATGAAACCCCTTTGCTTTACAGTATTGTATTTGGAGAGGGAGTAGTAAATGATGCTACCTCTATTGTTCTTTTCAATTCAATCCAATCACTTGACTTCAATAGCATCGATGCTATTACAGCCTTGAAATTGTTGGGGACCTTTCTTTACCTCTTTTGCACTAGTACTGCCCTTGGCATAGTAGTTGGCCTTTTAAGTGCTTATATAATTAAAACACTTTACTTCGGAAGGCACTCTACAGATCGTGAAGTTGCACTCATGATGTTGATGGCTTATTTGTCATATATGATCGCTGAGCTTTTGAATCTCAGTGGGATTTTGACTATTTTCTTCTGTGGCATTGTTATGTCACACTACACATGGCACAATGTTACAGGAAGCTCAAGGACAACAACCAAGCATTCCTTTGCAACTATCTCATTCATTGCTGAAACCTTTATATTTCTGTATGTTGGCATGGATGCTTTAGACATTGACAAATGGAAAAGAAGCAAAGCCAGGTAA 1014 0.4024 MPKMAFFLPPLSFSTSYLSTSTIVALSVFFTLLCACIIIGHLLEENRWANESITALLLGLCSGVVVLLVTKFHSTKILIFSEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTIILLFGVLGTVISFCLISVGAFLLTNRIGIANLGIKDHLAIGAILSATDSVCTLQVLSQDETPLLYSIVFGEGVVNDATSIVLFNSIQSLDFNSIDAITALKLLGTFLYLFCTSTALGIVVGLLSAYIIKTLYFGRHSTDREVALMMLMAYLSYMIAELLNLSGILTIFFCGIVMSHYTWHNVTGSSRTTTKHSFATISFIAETFIFLYVGMDALDIDKWKRSKAR. 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06346 337 Pfam Sodium/hydrogen exchanger family 30 324 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Seca8g06346 337 Gene3D - 145 197 - -
Seca8g06346 337 PRINTS Na+/H+ exchanger signature 153 163 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Seca8g06346 337 PRINTS Na+/H+ exchanger signature 113 121 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Seca8g06346 337 PRINTS Na+/H+ exchanger signature 84 95 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Seca8g06346 337 PRINTS Na+/H+ exchanger signature 98 112 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Seca8g06346 337 PANTHER SODIUM/HYDROGEN EXCHANGER 23 330 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06346 Seca-Chr8 157753767 157756633 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06346 11 332 Antiporters AT3G05030 69.876 3.13e-164 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06346 K14724 - ccaj:109808094 539.65