Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06335 ATGGCGAATGACTGTATCGATCATCATTGTTTATGGGACCATACCAAAAGCTTTGCTCATAAAGCAAAGAAGGTCTCAATGGCAGAAGCTTTAAATCTTAAGCCCAAAAAGGGACTAGGATCTCTGTTTTCTTCCTCTGCTTCTGCCCAAGACTTGAGACATTTGGACCTGGAAAAAGAGAAAGATGATGAGACAACTCCAAGAGGGGTTTTAGAGGCCTGTGTTAGAGAATTTGACTCTCATAAGCCACCTGAATCAGAAACTAGTAGTTCAAGTTCCAGTACACGGTCTCACTGGAGCAAGTTTTTCAAATTGTGGAAAAAAAGTTCATTTAAGCGCCTAGCTTCCATCCCTGCTAGTATCAGTGTGCCAAAGATACCAAAGTGGAAAAGCAGAAGCACTAGAGAAAATCCTGCAAGAAGTAAACTATACAACTTCAGGTGTTCTTTGGTGACTTTTAGCCTCTCTGACCTTAGAAATGCAACCAACAATTTCAGCAAAGAAAATTTAATTGGAAGAGGTGGTTTTGCTGAGGTTTACAAGGGTGTTCTCCAAGATGGGCAATTAATAGCTGTGAAGAAAATGACTAAAGGGACCACAGATGAGAAGACAGCAGGATTTCTATCTGAGCTAGGTGTTAGTGCTCATGTTGACCATCCTAATACTGCCAAAATTATTGGATGTGGTGTAGAAGGAGAAATGCACCTTGTCTTTGAACTATCTCCACTGGGAAGTTTAGGGTCTCTTCTTCATGGTTCAGATAAAAACAAGTTAGATTGGAGTAAAAGATACAAAATTGCTCTAGGAATAGCTGATGGTCTCCTCTATCTACATGAGAATTGTCACAGACGAATCATTCATAGAGATATTAAGTCAGAGAATATTCTGCTCACGGACAATTTTGAGCCACAGATTTGTGATTTTGGGCTAGCAAAGTGGTTACCAGAACAATGGACTCACCATAATGTGTCAAAATTTGAAGGCACATTTGGGTACTTTGCTCCTGAATATTGCATGCATGGTATAGTAGATGAGAAAACTGATGTTTATTCCTTTGGAGTCCTACTTTTGGAGATCATAACTGGGCGTCCTGCTTTGAGTAATTTGCAGCAGAGTGTTGTGATATGGGCAAAACCTTTGCTTGACACTCATAATATCAAGGACCTTGTTGATCCTTCTCTTGGTGATGATTATGACCGAGAACAGATGCGTCATGTTGTTTTGACTGCATCACTGTGTGTTGAACAGTCTCCTATCTCACGCCCCCGCATGAGTCAGGTGCTTTGGGCTTGCTTTGACAGGCTAGAGCTTGGTCCGTCTTCTTTCAAACATATCCTTTTACTTGGTTATTCCAATGGCTTTCAAGTCCTTGATGTGGAAGATGCCTCTAATATCAGGGAACTTGTCTCGAAACGTGATGATCCAGTTTCATTTTTACAGATGCAGCCTGTCCCTGCAAATTTGGAGGGTTGTGAAGGATTTAGAGCATCACATCCTTTGCTCTTGGTTGTTGCATGTGATAAATCGAAGATCCCTGATGGGCATAACGAAGCTCAAGCTGAAAATATTGTCAACTCAGCTACAGCTGTTAGATTTTACTCACTAAGGTCCCATACTTATGTTCATGCTTTGAGATTCCGTTCAACTGTCTACATGGTTAGATGCAGTCCCCAAATAGTGGCTGTGGGTCTTGCTACTCAAATATACTGTTTTGATGCTCTTACTCTTGAGAATAAGTTCAGTGTTCTCACTTACCCTGTGCCTCAGTTGGGAGGCCAGGGAATGGTTGGGGTTAATATTGGTTATGGTCCTATGGCTGTAGGGCCACGGTGGTTAGCTTATGCCTCCAACAACCCATTGTTGTCAAACACTGGTTGCTTAAGTCCTCAGAGTCTTACTCCTCCTGCTGTCAGCCCATCAACATCACCGAGCAGTGGAAACCTGGTAGCCCGATATGCCATGGAGTCTAGCAAGCACTTGGCTGCTGGGCTGTCTAAATACTATCAAGATCTTATACCTGATGGCTCCAGTTCTCCTGTATCATCAAATTCAAGCTGGAAAGTTAGTCGATTTACATCAAATTCGGCAGAAACAGATGCAGCTGGGGTGGTTGTTGTCAAGGATTTTATTTCTAGAGCTGTTGTGGCACAATTTAGGGCCCATACTAGTCCAATATCTGCTCTATGTTTTGACCCTAGTGGGACACTTCTAGTTACTGCCTCAATTCATGGTAACAACATCAATATATTCCGAATTATGCCTTCCTGCTCAAGAAATGGATCAGGTTCTCACAGCAGTGATTCAAGATGTTCTCATGTGCACCTTTACAAGCTCCACCGTGGCATGACATCTGCTGTAATACAAGATATTTGTTTTAGCCATTACAGTCAGTGGGTTGCGATCATTTCCTCCAAGGGAACTTGTCATATTTTTGTTCTTGCCCCTTTTGGTGGTGAGACAGTTCTTAGGATACACAATCAAGACACAGAAGGGCCTGTTCTTTTGCCAAATTTTCCTCTACCGTGGTGGTTCACTCCACATTTCACAGTAAACCAGCAGCAGCTTTGCCCAGCACCCCCACCTCCTGTTGTTCTTTCTGTGGTTAGCAGAATAAAAAATATTAACGTCGGATGGCTCAATTCAGTTAGTAATGCTGCATCTTCTGCAGCAGGGAAAGTCTCAGTTCCATCTGGTGCTGTTTCTGCTGTTTTTCATAGTTCCGTTCCTTGTTTTTCACACAACGCATACTCAAACATTCATGCTATGGAACACTTACTGGTTTATACCCCTTCTGGTCATTTAATTCAATATAGACTACTACCGCCATTAGTGGCAGACCCAAGTGAAACTGCTTTGAGAACAGCCCCAGCTCCTTCAGCACAGATACAAGAAGACGATTTGCGAGTGAAGGTTGAACCTGTTCAATGGTGGGATGCCTGTAGGAGATCTGATTGGCCAGAAAGAGAGATAAATATATTGGGGAATACTCTTGGTGGACTGGAAGCTGCAGAGATGATCTTGGATAGTTCAGATCATGAAGATAATAGTGTTGGGAACAATAATTCCATGGGACATAATAAGCAATGTCACTTCTCAAATGCAGAGGTACATATAAGCTCTGGGAGGATACCAATTTGGCAGCAGTCAGAGGTCTCTTTCTTTGTGATGAATCCTTTGGAGGCTGGAGAGTGGAATTTATGTGAACTTCTTACCAATGGAGAGATTGAAATAGAAAATATTCCTGTTAATGAGGTTGAAATAAGACAGAAGGATTTGTTGCCCTTCGTTGATCATTTCCATAGAATTCAGTCTACTTGGGGTGACAGAGGTATTGTTATGGGAAGATGCTCTACCTCTTCATCTGATTCACATGTGACTGAAGAGAAGTTATCTGAAGATACTGCAATTTCCCATTCAAAGTTGATGGTACCTGGCTTAGCTGAAAAAACAGGCGTTGGTGCCTCAAATTTTGCCGACAGTATAACTACAAATGTTAAACCATCACAACATCCAAAAGCCAGTGACAGTTTCAATTCAAGTTTTATTGGCTGTGATGTGAACATGAATGTTACTTGTGAGGAGTAA 3585 0.4195 MANDCIDHHCLWDHTKSFAHKAKKVSMAEALNLKPKKGLGSLFSSSASAQDLRHLDLEKEKDDETTPRGVLEACVREFDSHKPPESETSSSSSSTRSHWSKFFKLWKKSSFKRLASIPASISVPKIPKWKSRSTRENPARSKLYNFRCSLVTFSLSDLRNATNNFSKENLIGRGGFAEVYKGVLQDGQLIAVKKMTKGTTDEKTAGFLSELGVSAHVDHPNTAKIIGCGVEGEMHLVFELSPLGSLGSLLHGSDKNKLDWSKRYKIALGIADGLLYLHENCHRRIIHRDIKSENILLTDNFEPQICDFGLAKWLPEQWTHHNVSKFEGTFGYFAPEYCMHGIVDEKTDVYSFGVLLLEIITGRPALSNLQQSVVIWAKPLLDTHNIKDLVDPSLGDDYDREQMRHVVLTASLCVEQSPISRPRMSQVLWACFDRLELGPSSFKHILLLGYSNGFQVLDVEDASNIRELVSKRDDPVSFLQMQPVPANLEGCEGFRASHPLLLVVACDKSKIPDGHNEAQAENIVNSATAVRFYSLRSHTYVHALRFRSTVYMVRCSPQIVAVGLATQIYCFDALTLENKFSVLTYPVPQLGGQGMVGVNIGYGPMAVGPRWLAYASNNPLLSNTGCLSPQSLTPPAVSPSTSPSSGNLVARYAMESSKHLAAGLSKYYQDLIPDGSSSPVSSNSSWKVSRFTSNSAETDAAGVVVVKDFISRAVVAQFRAHTSPISALCFDPSGTLLVTASIHGNNINIFRIMPSCSRNGSGSHSSDSRCSHVHLYKLHRGMTSAVIQDICFSHYSQWVAIISSKGTCHIFVLAPFGGETVLRIHNQDTEGPVLLPNFPLPWWFTPHFTVNQQQLCPAPPPPVVLSVVSRIKNINVGWLNSVSNAASSAAGKVSVPSGAVSAVFHSSVPCFSHNAYSNIHAMEHLLVYTPSGHLIQYRLLPPLVADPSETALRTAPAPSAQIQEDDLRVKVEPVQWWDACRRSDWPEREINILGNTLGGLEAAEMILDSSDHEDNSVGNNNSMGHNKQCHFSNAEVHISSGRIPIWQQSEVSFFVMNPLEAGEWNLCELLTNGEIEIENIPVNEVEIRQKDLLPFVDHFHRIQSTWGDRGIVMGRCSTSSSDSHVTEEKLSEDTAISHSKLMVPGLAEKTGVGASNFADSITTNVKPSQHPKASDSFNSSFIGCDVNMNVTCEE. 1195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06335 1194 Pfam Breast carcinoma amplified sequence 3 860 1094 IPR022175 -
Seca8g06335 1194 SMART WD40_4 769 812 IPR001680 GO:0005515
Seca8g06335 1194 SMART WD40_4 711 751 IPR001680 GO:0005515
Seca8g06335 1194 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 141 240 - -
Seca8g06335 1194 FunFam Autophagy-related protein 18h 411 829 - -
Seca8g06335 1194 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 242 434 - -
Seca8g06335 1194 Gene3D Transferase(Phosphotransferase) domain 1 242 429 - -
Seca8g06335 1194 Gene3D - 430 833 IPR015943 GO:0005515
Seca8g06335 1194 ProSiteProfiles Protein kinase domain profile. 165 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06335 1194 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 424 1161 IPR045142 GO:0006914
Seca8g06335 1194 Pfam WD domain, G-beta repeat 715 741 IPR001680 GO:0005515
Seca8g06335 1194 SUPERFAMILY WD40 repeat-like 443 811 IPR036322 GO:0005515
Seca8g06335 1194 ProSitePatterns Protein kinases ATP-binding region signature. 171 194 IPR017441 GO:0005524
Seca8g06335 1194 Gene3D Phosphorylase Kinase; domain 1 127 239 - -
Seca8g06335 1194 ProSitePatterns Serine/Threonine protein kinases active-site signature. 285 297 IPR008271 GO:0004672|GO:0006468
Seca8g06335 1194 SUPERFAMILY Protein kinase-like (PK-like) 142 431 IPR011009 -
Seca8g06335 1194 SMART serkin_6 165 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06335 1194 Pfam Protein tyrosine and serine/threonine kinase 168 376 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06335 Seca-Chr8 157703347 157719123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06335 153 438 Trihelix Transcription Factor Family AT1G70460 42.712 1.09e-65 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Seca8g06335 BCAS3 2.5e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06335 - - gmx:112998147 1282.32