LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca8g06331	ATGGAGTGCAACAAGGATGAGGCGCTGAGGGCTAGACAAATTGCTGAAAGTAGAATGCAAAGAGGTGAATTTGTAGAGGCACTCAAGTTTGCTATGAAGGCCAAAGCTCTGTATCCTGACATTGAAAACATTGCTCAGATACTTACGGTTTGTGAGGTTCACAATGCTGCAATGAACAAACTCTCTGGGTGTCTCATGGACTGGTATAGAATTCTTCAGACTGAAGGATTGGCAGATGAAGCAACCATCAAGAAACAGTACAGGAAGCTTGCACTATTACTTCATCCTGATAAAAATAAATTTTCTGGCGCAGAAGCTGCTTTCAAGTTGATTGGGGAAGCCAATAGGGTGTTGAGTGACCGAGCAAATCGATCTTTGTATGACATCAAGTTTAAAGGCTCTGTGAGAACTGCGGCACCTAAGACCTCACCCCCTCCCTCAAATGGAAATGCAACAAATTATCAGAAAAATTCCTATTCAAACCCCAACTGGAGGAATGCCCATCAGCAAGCTCAACAGCAGACTTTCTGGACATGTTGCCATTATTGTAGTGCAAAGTACCAATACTACACAAATGCTGTAAATAAATCCATATTCTGTCGAAATTGTTTGAAACCCTTTGTAGCTCATGTTTTAAGGTACAACGGTGTCCCACCAGGACCATATATCCAGAAGCATGATCCGCCAAAACCAGCCTCAGAAAGTAAAGATGGAAAACCCCGTGGTGGAGGATTTACTGTGCGGTCACATCCTATACCTATGAAAAAATGTGCTACTGGAGTTGATGGGAAACATACAGGCGAAAATAATACAGATGGCTGTGTTCCTGTGTCCAAAGACATGGAGTCACAAACCACAACCAATGTTGGAAGTAAGAGAGTAAGGCAGTCAGCACCAGATTCAGGAGAAAGTTTTAAAGCTGGAAATGGTGTTCACATGAAAGATGCTGGAAATGGTGATCACATGAAAGATGCCAATGTACGAGAAAATTATGCTGATCCTTCAGGATTTAATGCTAGGAGATCTTCCAGGAAAAGACAACATGTTTCTTACGTGGAAACCCCTGAAGATGACGATTTTGAGATTCCTTCCAAAATGCCACGGCAAAATGGTTCATTTAACACCGATGAAGTTGAGAAAAAGAACGTGGCTGCTAGTGGTGTGGTTGATCAGAATGGAGAGGTGAGAAATAAAGCAAGTAGTCCACCTGAAGAAACATGTTTGAAGAATAAAAGCCAATTTGAGCAATCTCATGTTCAAGGAGAGAAGGTATTGGAGTCAGATCTTGATCGTGGAAAATCAAAAGAGGACCAACGCGCTTCATTAAATTCAAAGGCCTCCTCTGGTCCAGATATCATTGTTTGTCCTGATACAGATTTCAATGATTTTGAGAAGGATAAGATGGATGATTGCTTTGCGGTTAATCAATTATGGGCAATTTATGATTCCACTGATGCTATGCCTCGATTTTATGCACTTATCAGGAAAGTGTTCTCCCCTTTCAAGTTAAAGATTACTTGGTTGGAACCTGATCCAGATAACCAAGGGGAGATTGATTGGCATGGTGCAGATTTGCCTATTGCTTGCGGTAAGTTCAAACTTGGTGATTCTCAGAAAATTACAGATCGTGCTATGTTCTCTCATCAGATGCAGTGCATACAAGGAAGTGGCAATGGTTCTTATCTGATATATCCTAAGAAGGGAGAAACTTGGGCAATTTTCAGAAATTGGGATATCAAATGGAGTTCTAATCCAGAAAATTATTTGATGTGTGAATTTGAATATGTAGAAATCCTATCAGATTTTGCTGAGAATGTTGGCATTGAAGTTGCATACCTGGGCAAAGTGAACGGGTTCATTAGCCTCTTTCAGAAAACTGAGAAGAATGGAGTGTTCATATTTTGTGTTCTACCTAATGAGCTATACAGGTTCTCACATCCAATTCCTTCATACAAGATGACTGGTAATGAAAGGGAAGGTGTTCCAAGAGGATCTTTTGAACTTGATCCTGCTGCTTTGCCAAATAACTTGTTTGAAGTTGGTGGTTCCAGTAATGTGAAGATGGTGAATGGAATGTTAAACACTGGAGTGGGGCAAGCGGTGGCTGGCTAA	2112	0.4105	MECNKDEALRARQIAESRMQRGEFVEALKFAMKAKALYPDIENIAQILTVCEVHNAAMNKLSGCLMDWYRILQTEGLADEATIKKQYRKLALLLHPDKNKFSGAEAAFKLIGEANRVLSDRANRSLYDIKFKGSVRTAAPKTSPPPSNGNATNYQKNSYSNPNWRNAHQQAQQQTFWTCCHYCSAKYQYYTNAVNKSIFCRNCLKPFVAHVLRYNGVPPGPYIQKHDPPKPASESKDGKPRGGGFTVRSHPIPMKKCATGVDGKHTGENNTDGCVPVSKDMESQTTTNVGSKRVRQSAPDSGESFKAGNGVHMKDAGNGDHMKDANVRENYADPSGFNARRSSRKRQHVSYVETPEDDDFEIPSKMPRQNGSFNTDEVEKKNVAASGVVDQNGEVRNKASSPPEETCLKNKSQFEQSHVQGEKVLESDLDRGKSKEDQRASLNSKASSGPDIIVCPDTDFNDFEKDKMDDCFAVNQLWAIYDSTDAMPRFYALIRKVFSPFKLKITWLEPDPDNQGEIDWHGADLPIACGKFKLGDSQKITDRAMFSHQMQCIQGSGNGSYLIYPKKGETWAIFRNWDIKWSSNPENYLMCEFEYVEILSDFAENVGIEVAYLGKVNGFISLFQKTEKNGVFIFCVLPNELYRFSHPIPSYKMTGNEREGVPRGSFELDPAALPNNLFEVGGSSNVKMVNGMLNTGVGQAVAG.	704

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca8g06331	703	MobiDBLite	consensus disorder prediction	136	166	-	-
	Seca8g06331	703	ProSiteProfiles	dnaJ domain profile.	67	131	IPR001623	-
	Seca8g06331	703	MobiDBLite	consensus disorder prediction	271	298	-	-
	Seca8g06331	703	PRINTS	DnaJ domain signature	69	87	IPR001623	-
	Seca8g06331	703	PRINTS	DnaJ domain signature	103	123	IPR001623	-
	Seca8g06331	703	PRINTS	DnaJ domain signature	87	102	IPR001623	-
	Seca8g06331	703	MobiDBLite	consensus disorder prediction	346	364	-	-
	Seca8g06331	703	SUPERFAMILY	Chaperone J-domain	60	131	IPR036869	-
	Seca8g06331	703	Pfam	Domain of unknown function (DUF3444)	452	657	IPR024593	-
	Seca8g06331	703	MobiDBLite	consensus disorder prediction	393	420	-	-
	Seca8g06331	703	MobiDBLite	consensus disorder prediction	229	243	-	-
	Seca8g06331	703	SMART	dnaj_3	66	123	IPR001623	-
	Seca8g06331	703	CDD	DnaJ	67	120	IPR001623	-
	Seca8g06331	703	MobiDBLite	consensus disorder prediction	140	166	-	-
	Seca8g06331	703	Gene3D	DnaJ domain	66	181	IPR036869	-
	Seca8g06331	703	MobiDBLite	consensus disorder prediction	421	440	-	-
	Seca8g06331	703	PANTHER	DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN-RELATED	1	680	-	-
	Seca8g06331	703	Pfam	DnaJ domain	67	128	IPR001623	-
	Seca8g06331	703	MobiDBLite	consensus disorder prediction	221	448	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca8g06331	Seca-Chr8	157657821	157660004	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca8g06331	4	219	SUVH1 or 3-interacting DNAJ domain-containing protein superfamily	AT2G01710	33.784	8.73e-24	101

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca8g06331	-		-	aprc:113873604	913.679