Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06329 ATGAACAACAATTATAGTGATAGAGGCAATGATAGTTCTGATGAAAGTCATAGTGAAGATAACAATGATGTGGGTAATCAGAATGAGGCAGTGGACGAAGATTTAACATATGAACAGTATAAAAGTATAATAGACCTAACTGCGAATGACGTTCGAGGTATGGAGTTTGGTAGTGACGAGCATGCATGTAAATTTTATGATTCATATGCTAGGTGTCATGGCTTTGTTGCAAGAAAAGATGATATAAAACGTGATGCGAAAGACAATATTATAATGCGTCAATTGGTTTGCAACAAAGAGGGGTTGAGAAATAAAAAGCACTTTATAAGGTTGGATAGAAAGAGACCTCATAGGCCAATCACTCGTACTAGTTGTCAAGCTAAGCTTAGAGTACACTTTGATTACAAGAGATCAAAATGGACAGTCTTGTCCTTTGTGGAGACTCATAATCATTATTTATGTCCACCAAAATATAGACACTTAATCCCTGCACATCGCAAGATGGGTGATACAGATAAAGCTCAAGCGGAAAGTTTGCATTCCTATGGAGTTAGGACTTGTCACATTATGGGATATATGTTGGCTCAGAAAGGTGGGTATAGTGCTTTAGGGTTTACCAAAAAGGATATGTACAATTATTTTAGTGAGAAAAACCGTGAGAAGATCAAAGATGGGGATGCATGCATTGCATTAAGTTATTTACAAGGCAAGGCAGATAATAATGGATTGATGCATTCATCATATTCATTTACAAGTGATGGTAAATTGAAGAATTTGTTCTGGGCAGATGAAGTTAGTAGAAGTGATTTTCAGTGCTTTGGTGATGTTCTAGCATTTGACACCACTTACAAAAAAAACAAGTACAACAGACCTCTAGTGATTTTCTCCGGTTGCAATCATCATTCACAGACTGTTATCTTTGGTTGTGCCTTGGTGAGTGATGAAACAATTGATACTTATAAGTGGCTGTTAGAATCCTTTTTAGATGCTATGTGGAATAAACATCCTAAAGCTGTGGTGACAGATGGTGATGGGGCTATGAGGGAGGCGATCAAGCAAGTTTTTCCAAATGCAACCCATAGACTCTGTGCGTGGCACTTACATAAGAATGCATGTGAGAATGTGAAGAATTCCTCATTCTTAGGGGATTTCAAGACTGCAATGTATGCTAATTTTACACCAGAAAAATTTGAAAATTTTTTGCAGCAATTGATTTTGAAACACGGGCTTGTAGAAAACAAGTGGGTTTCTAAAACCTATGAGAACAAGTATATGTGGGCTAGTGCATACTTGCGTGATAAGTTCTTTGGTCGTATAAGGACAACTTCACAATGTGAAGCCATTAATTCTCTTGTCAAGTCATATGCTAATAACAAATGTAGCATTATTGACTTCATGCATAAATTTGAGCAAGTGGTGAGGGAATATAGAAACAATGAGCTCATGGCAGATTTTAAGTGTTTCTGGTCAGAACCTGTGCTAACCATTTCTCTTTACAAGATTGAGCGTGATGCTTCAAAAATTTTCACCCAAGAGATTTTTAAGGATGTTAAATCTGAAATTGAAGCTGCTGGTGCCTTGAATGTTATTGAACGTGTGATAAATGGTGAGAAATTAATATTGAAGATGAACAAATATTGTGATATTGGAAGTGAATTTGTTGTTGATTATGATACTGTGAACTGTAATTTTTTCTGTGAATGCAAACTATTTGAATCTCGTGGCATTCCATGTGCTCATATTATATGTGCCATGAAAAATGAGCACATAGACTCCATTCCTAGCAGTTTGATATGCAAACGGTGGACAAAAACTGCAAAGAGTGATATTATTTCTGCAAGTCGATTGGATGATTTAGATTCTGATGTCATGTCTGGGGCCCGTGTTGGGGCTGCAGCTGCTGCTTGTAATAGATTATGCAGTATTGCTAGAGAGAAGAATGCATGTTTCAATGATATTTTAAATGATACTTTAAGCTGCTTAATAAGTATGAGAATCAAGGGGATCCAAACAACACAGTTAGGTCATCTTTTAAGGATGTGGGTGATCCATATTTAG 2058 0.3664 MNNNYSDRGNDSSDESHSEDNNDVGNQNEAVDEDLTYEQYKSIIDLTANDVRGMEFGSDEHACKFYDSYARCHGFVARKDDIKRDAKDNIIMRQLVCNKEGLRNKKHFIRLDRKRPHRPITRTSCQAKLRVHFDYKRSKWTVLSFVETHNHYLCPPKYRHLIPAHRKMGDTDKAQAESLHSYGVRTCHIMGYMLAQKGGYSALGFTKKDMYNYFSEKNREKIKDGDACIALSYLQGKADNNGLMHSSYSFTSDGKLKNLFWADEVSRSDFQCFGDVLAFDTTYKKNKYNRPLVIFSGCNHHSQTVIFGCALVSDETIDTYKWLLESFLDAMWNKHPKAVVTDGDGAMREAIKQVFPNATHRLCAWHLHKNACENVKNSSFLGDFKTAMYANFTPEKFENFLQQLILKHGLVENKWVSKTYENKYMWASAYLRDKFFGRIRTTSQCEAINSLVKSYANNKCSIIDFMHKFEQVVREYRNNELMADFKCFWSEPVLTISLYKIERDASKIFTQEIFKDVKSEIEAAGALNVIERVINGEKLILKMNKYCDIGSEFVVDYDTVNCNFFCECKLFESRGIPCAHIICAMKNEHIDSIPSSLICKRWTKTAKSDIISASRLDDLDSDVMSGARVGAAAAACNRLCSIAREKNACFNDILNDTLSCLISMRIKGIQTTQLGHLLRMWVIHI. 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06329 685 ProSiteProfiles Zinc finger SWIM-type profile. 553 589 IPR007527 GO:0008270
Seca8g06329 685 PANTHER OS01G0519700 PROTEIN 51 612 - -
Seca8g06329 685 SMART 26again6 564 591 IPR006564 GO:0008270
Seca8g06329 685 Pfam MULE transposase domain 276 370 IPR018289 -
Seca8g06329 685 Pfam FAR1 DNA-binding domain 64 154 IPR004330 -
Seca8g06329 685 MobiDBLite consensus disorder prediction 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06329 Seca-Chr8 157628762 157630819 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca8g06329 MULE 4.1e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06329 - - ccaj:109792835 846.654