Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06321 ATGGGGTGTGTGATTAGCCGAGAAGTGTCATCCGGTATAATCTCTGAGGTGAAGGAGGAGAAGAGTTTGAGTGTTGAATCCAACAAGAAGGTTGATGAAGTGTCTACCAGCAGAACTGAGGGAAACGTGGCAGAGGTTCAGAATGGTGAGAAGGTGAAGGAGAAGGAAAAGGAAGAGAAGCGTGGCGGTGATGGGGTTCAGCGGCCGAGGGGTGAAAGAAGAAGATCGAAGCCAAACCCAAGGCTAAGTAATCCTCCAAAGCATTTGCAAGGGGAGCAAGTAGCAGCTGGGTGGCCATCTTGGCTTACAGCAGTGTGTGGGGAAGCCCTTAGTGGGTGGATTCCAAGAAAGGCTGACACATTTGAGAAAATAGATAAGATTGGTCAAGGAACATATAGTAATGTGTACAAAGCGAAAGACATGTTGACGGGTAAGATTGTTGCACTGAAGAAGGTTCGATTTGACAATTTGGAACCTGAGAGTGTAAAATTCATGGCTAGAGAGATTCTAATATTGCGAAGATTGGATCATCCCAATGTTATAAAGCTAGAAGGTTTAGTTACATCGAGAATGTCCTGGAGTTTGTATTTGGTGTTTGATTACATGGTTCATGATTTAGCTGGACTTGCTGCTAGCCCTGACATCAAGTTCACAGAGCCTCAGGTCAAATGTTATATGCATCAACTGCTATCAGGACTTGAGCACTGTCATAATCGACATGTACTTCACCGTGATGTTAAAGGATCGAATCTTCTTATTGACAATGAAGGAATACTCAAAATTGCTGACTTTGGACTTGCATCTTTCTTTGATCCAAACCGCAGGCATCCCATGACTAATCGTGTAGTTACTCTTTGGTACCGGCCTCCTGAGTTGCTTCTTGGTGCCACAGATTATGGTGTGGGTGTGGATCTTTGGAGTGCTGGTTGCATTTTAGGAGAGTTATTGGCTGGGAAACCGATTATGCCTGGTCGTACAGAGGTGGAACAACTGCATAAGATATACAAACTTTGTGGTTCACCTTCTGATGAGTATTGGAAGAAGTCAAAGTTGCCTAATGCTACCTTGTTTAAACCTCGAGAGCCATACAAAAGATGCATAAGAGAGACGTTTAAAGATTTTCCACCTTCTGCACTGCCGCTTATCGATACTCTTCTTGCAATTGATCCAGCAGAACGGAAGAGTGCCTCCGATGCTCTAAGAAGTGAGTTCTTCACAACAGAACCTTATGCTTGTGATCCTTCTAGTCTTCCAAAGTATCCCCCAACCAAGGAAATGGATGCTAAACGACGGGATGATGAAGCAAGGAGATTAAGAGCTGCAGGCAAAGCTCATGGTGATGGTGGTGGAAAGAAGCATCGTACACGTGATCGTGCTGTAAAAGCTGCTCCTGCTCCTGAAGCCAATGCTGAGCTTCAATCCAATATTGATAGACGGCGGCTAATCACTCATGCTAATGCTAAGAGCAAGAGCGAAAAATTCCCTCCGCCACATGAAGATGGGCAACTAGGCTTTCCTTTGGGAGCTTCAAATCATATTGATCCAGATATTGTTCCTACTGATGTCCCTTTGGGTTCAACCTCATATACCTTTTCAAAGGAACCATTCCAAGCATGGTCAGGTCCCATTGGTAATTCTGCTAGCAGTGGTGTCACAAAGAAGAAGAAACACACTGCAGGTGATGCATTGGATTTATCAAAACCATATAAAGGTGCCCTCAAGGATAAGGGTAAAGGAAAGAAAATCATAGCTTAA 1755 0.441 MGCVISREVSSGIISEVKEEKSLSVESNKKVDEVSTSRTEGNVAEVQNGEKVKEKEKEEKRGGDGVQRPRGERRRSKPNPRLSNPPKHLQGEQVAAGWPSWLTAVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDMLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSWSLYLVFDYMVHDLAGLAASPDIKFTEPQVKCYMHQLLSGLEHCHNRHVLHRDVKGSNLLIDNEGILKIADFGLASFFDPNRRHPMTNRVVTLWYRPPELLLGATDYGVGVDLWSAGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKLPNATLFKPREPYKRCIRETFKDFPPSALPLIDTLLAIDPAERKSASDALRSEFFTTEPYACDPSSLPKYPPTKEMDAKRRDDEARRLRAAGKAHGDGGGKKHRTRDRAVKAAPAPEANAELQSNIDRRRLITHANAKSKSEKFPPPHEDGQLGFPLGASNHIDPDIVPTDVPLGSTSYTFSKEPFQAWSGPIGNSASSGVTKKKKHTAGDALDLSKPYKGALKDKGKGKKIIA. 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06321 584 Gene3D Phosphorylase Kinase; domain 1 108 203 - -
Seca8g06321 584 Gene3D Transferase(Phosphotransferase) domain 1 204 444 - -
Seca8g06321 584 FunFam probable serine/threonine-protein kinase At1g54610 108 203 - -
Seca8g06321 584 MobiDBLite consensus disorder prediction 535 562 - -
Seca8g06321 584 CDD STKc_CDK9_like 121 405 - -
Seca8g06321 584 ProSitePatterns Protein kinases ATP-binding region signature. 127 150 IPR017441 GO:0005524
Seca8g06321 584 MobiDBLite consensus disorder prediction 535 553 - -
Seca8g06321 584 Pfam Protein kinase domain 121 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06321 584 SMART serkin_6 121 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06321 584 MobiDBLite consensus disorder prediction 415 479 - -
Seca8g06321 584 MobiDBLite consensus disorder prediction 423 454 - -
Seca8g06321 584 MobiDBLite consensus disorder prediction 47 79 - -
Seca8g06321 584 SUPERFAMILY Protein kinase-like (PK-like) 116 412 IPR011009 -
Seca8g06321 584 MobiDBLite consensus disorder prediction 19 93 - -
Seca8g06321 584 FunFam probable serine/threonine-protein kinase At1g54610 204 445 - -
Seca8g06321 584 PANTHER CELL DIVISION PROTEIN KINASE 119 409 - -
Seca8g06321 584 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Seca8g06321 584 ProSiteProfiles Protein kinase domain profile. 121 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06321 584 MobiDBLite consensus disorder prediction 19 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06321 Seca-Chr8 157547787 157553571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06321 113 443 Core Cell Cycle Gene Families AT5G10270 52.450 6.22e-120 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Seca8g06321 Pkinase 2.1e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06321 K08819 - gmx:100817289 1002.28