Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06317 ATGAGTGAGAGAAAGCCAGGTGAGAAAAGAGAGAGGATGAAGAACATCTTCAAGAAGCTTCACATAGGGAGCAACCACGATCCTCATCGATCCAATGAAATTACGCCACCTGTACCCTCGACTTCATGTGCCGCCGAACACTCTCAAAATTCCGGCTCCTCTCCGGCAACTCCCTCTTCTGCGCCGTCGCCGTCGACGTCGTCCACGCCAGCCGTCGCGCCGCCGGTGACTGCGCTGGCCAATCGGCAAGACTTTTTCTCGTCGGAGGAGGAGTTTCAGGTGCAGCTAGCCCTAGCCATTAGCGCTTCCAATTCGGACTTCCGTGATGATCCCGAGAAGGATCAGATCCATGCAGCGACACTGCTGAGTTTGGGAGGCCATCGAATCGATTCGGTGAGGAACAAGGACGATGTGGCGGAGGCACTGTCGAGGCAGTACTGGGAATACAATGTGCTTGACTATGAGGAGAAAGTAGTAGATGGTTTTTATGATGTTTATGGACTCTATAATGATCCGGCGATGCAAGGAAAGATGCCGTCTCTAGCAGATCTTGAAGCAAACCCAGGAAGCTCTAACTTTGAAGTGGTCATAGTTAATCGAACAATTGATCCGGCCCTGGAAGAGCTGGCGCAAATTGCACATTGTATTGCATTGGACTGCCCTGTCACAGATATTGGTATTTTGGTACAAAGGCTTGCTGAACTTGTTACAAACCATATGGGTGGTCCTGTAAAGGATGCTAATATTATATTGGCAAGATGGACGGAAACGAGTACAGAGTTAAGGACATCTCTTCACACAAGTGTATTGCCTCTTGGGTCCTTGAATATTGGGCTCTCTAGGCATCGTGCTTTGCTTTTCAAGGTATTAGCTGACAACATTAAGATGCCTTGTAGACTGGTAAAAGGTAGTCATTACACTGGCGTCGAGGATGATGCTGTCAACATTATAAAGTTGGAGGATGAAAGGTCCCGTGGTACTGATATCTCCTATTCTGCTTTCAGGGAGTTTTTAGTTGATCTCATGGCTGCTCCTGGAACACTTATCCCCGCTGATATTTTAAATACAAAGGACAATGCCTTTAAGTCTTACAATCCCAATATTTTACCTAGTTTGCCTTCCACTAAGGAAACTGGATTTTCTTACTCAAGACCTGTCCCACCATCGCACGGTGAAGGTAGTAGTCGAACTGCTGTGATAAAAGGTCATTCGCCACCCTGGAATGGAAAATCACACGTTGAGAAGTCAGAGTATATGCCTTCAAGCTTGGGTTTGAACAGAGACACTGGCGTTGGTCCTTCTAAAATTCCTAATAGAGGGACTCCAAACCAAGTGGAAAATATGCCACCTGCGTATGGTACTTCTCTGTATAAAGGGACTCTTGGAATGAATGCAGTTGGTGATGGGACAAGATTGAATGTCAATGTTGTACCATATGCTCAGAACAGCCCCAATGACTCTCAGAACCTTTTCGCAGATCTTAACCCATTCCTGATGAAAGGGACTGGGAAGCCCTCTGTGCATAATAAACCTGTGGAAAATAAACCTCCTGAGCTTCAGAGTACAAAAAACAATATTGTTTCTGGTCGACCTGTGGCACCGCTGATGTGGAAGAATCGTCATGCTTACAATGAAGTCCCCAAGAAAACCAATCATAACCCTAATGAATATAACCCTCCTTTATTTGTTTCCAATATTTCTTCTGCATCTGAAAATTCTGATCTCCGTACTTCCAAATCATCATACAATACAAATATAAATAATGATATAAATGCTCAAAATTTGACACAAGTTACTGGATCAGTCTCACCATCTGGTGTAGGTGAATTGAACCAGATTGAGAATCTCAATGCTGGTTTTAACAGGGGGGATTTGGAAAATTCTCAAAATGTCATGGTAGAGGCGGTTAAAGAAACTGAAAACATTGAAACCAGATATCTTGACCGGAGGAAGTGCATACATGACAGATTCATGGGAAACAATTTGAAATTAAAAGATCCAGAGAGTCCTAGCTCTTCAATTGATTCCATTACAAACAGGGTCGATCAAATATTGGACGATGTAGATGTTGGTGAATGTGAGATTCCATGGGAGGATCTGGTTATTGGTGAAAGAATTGGTCTAGGTTCATATGGCGAGGTATACCATGCGGACTGGAATGGCACAGAGGTTGCTGTGAAGAAATTTTTGGATCAGGATTTTTCAGGCGTTGCCTTGTCTGAATTCAAAAGAGAAGTACGGATAATGCGCAGGCTGCGTCATCCAAATGTTGTTCTTTTTATGGGTGCTGTTACTCGGCCTCCCAATCTCTCAATCATTTCAGAGTTTCTTCCAAGAGGAAGCTTGTACCGAATTCTTCATCGCCCTAATTGTCAGATCGATGAGAAACGAAGAATAAAAATGGCTCTGGATGTGGCTAGGGGCATGAACTGCTTACACACCAGCACACCTACAATTGTTCACCGAGATCTGAAGTCCCCAAATCTTTTGGTTGATAAGAATTGGAATGTTAAGGTATGCGATTTTGGGTTGTCACGCTTGAAGCACAACACATTTTTGTCTTCCAAATCAACTGCTGGAACGCCGGAATGGATGGCTCCTGAAGTTCTCCGAAATGAGCCCTCAAATGAGAAGTGTGATGTTTATAGTTTTGGAGTCATCCTATGGGAGCTTGCCACTCTAAGGTTGCCGTGGAGTGGAATGAATCCTATGCAAGTTGTTGGTGCTGTGGGTTTCCAAAATCGTCGACTTGAAATTCCTAAGGAAGTTGATCCTATAGTTGCCAGAATAATCTGGGAATGTTGGCAACAGGATCCAAATTTGCGGCCCTCGTTTGCACAGCTCACAGTGGCTCTAAAGCCCCTGCAGCGTCTGGTTATCCCATCTCATCAAGACCAGGTAGCTCCACCTGTGCCGCAGGAGATTTCTGTAAATTCTACCCCATGA 2946 0.4457 MSERKPGEKRERMKNIFKKLHIGSNHDPHRSNEITPPVPSTSCAAEHSQNSGSSPATPSSAPSPSTSSTPAVAPPVTALANRQDFFSSEEEFQVQLALAISASNSDFRDDPEKDQIHAATLLSLGGHRIDSVRNKDDVAEALSRQYWEYNVLDYEEKVVDGFYDVYGLYNDPAMQGKMPSLADLEANPGSSNFEVVIVNRTIDPALEELAQIAHCIALDCPVTDIGILVQRLAELVTNHMGGPVKDANIILARWTETSTELRTSLHTSVLPLGSLNIGLSRHRALLFKVLADNIKMPCRLVKGSHYTGVEDDAVNIIKLEDERSRGTDISYSAFREFLVDLMAAPGTLIPADILNTKDNAFKSYNPNILPSLPSTKETGFSYSRPVPPSHGEGSSRTAVIKGHSPPWNGKSHVEKSEYMPSSLGLNRDTGVGPSKIPNRGTPNQVENMPPAYGTSLYKGTLGMNAVGDGTRLNVNVVPYAQNSPNDSQNLFADLNPFLMKGTGKPSVHNKPVENKPPELQSTKNNIVSGRPVAPLMWKNRHAYNEVPKKTNHNPNEYNPPLFVSNISSASENSDLRTSKSSYNTNINNDINAQNLTQVTGSVSPSGVGELNQIENLNAGFNRGDLENSQNVMVEAVKETENIETRYLDRRKCIHDRFMGNNLKLKDPESPSSSIDSITNRVDQILDDVDVGECEIPWEDLVIGERIGLGSYGEVYHADWNGTEVAVKKFLDQDFSGVALSEFKREVRIMRRLRHPNVVLFMGAVTRPPNLSIISEFLPRGSLYRILHRPNCQIDEKRRIKMALDVARGMNCLHTSTPTIVHRDLKSPNLLVDKNWNVKVCDFGLSRLKHNTFLSSKSTAGTPEWMAPEVLRNEPSNEKCDVYSFGVILWELATLRLPWSGMNPMQVVGAVGFQNRRLEIPKEVDPIVARIIWECWQQDPNLRPSFAQLTVALKPLQRLVIPSHQDQVAPPVPQEISVNSTP. 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06317 981 ProSitePatterns Protein kinases ATP-binding region signature. 706 728 IPR017441 GO:0005524
Seca8g06317 981 MobiDBLite consensus disorder prediction 1 73 - -
Seca8g06317 981 ProSitePatterns Serine/Threonine protein kinases active-site signature. 819 831 IPR008271 GO:0004672|GO:0006468
Seca8g06317 981 SMART serkin_6 700 955 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06317 981 MobiDBLite consensus disorder prediction 1 28 - -
Seca8g06317 981 FunFam Serine/threonine-protein kinase CTR1 779 962 - -
Seca8g06317 981 Gene3D Phosphorylase Kinase; domain 1 693 777 - -
Seca8g06317 981 PRINTS Tyrosine kinase catalytic domain signature 923 945 IPR001245 GO:0004672|GO:0006468
Seca8g06317 981 PRINTS Tyrosine kinase catalytic domain signature 813 831 IPR001245 GO:0004672|GO:0006468
Seca8g06317 981 PRINTS Tyrosine kinase catalytic domain signature 879 901 IPR001245 GO:0004672|GO:0006468
Seca8g06317 981 PRINTS Tyrosine kinase catalytic domain signature 860 870 IPR001245 GO:0004672|GO:0006468
Seca8g06317 981 PRINTS Tyrosine kinase catalytic domain signature 774 787 IPR001245 GO:0004672|GO:0006468
Seca8g06317 981 Pfam Ethylene-responsive protein kinase Le-CTR1 139 349 - -
Seca8g06317 981 MobiDBLite consensus disorder prediction 383 450 - -
Seca8g06317 981 CDD STKc_MAP3K-like 706 949 - -
Seca8g06317 981 MobiDBLite consensus disorder prediction 29 73 - -
Seca8g06317 981 FunFam Serine/threonine-protein kinase isoform 1 691 778 - -
Seca8g06317 981 MobiDBLite consensus disorder prediction 504 525 - -
Seca8g06317 981 SUPERFAMILY Protein kinase-like (PK-like) 690 972 IPR011009 -
Seca8g06317 981 Pfam Protein tyrosine and serine/threonine kinase 701 950 IPR001245 GO:0004672|GO:0006468
Seca8g06317 981 MobiDBLite consensus disorder prediction 436 450 - -
Seca8g06317 981 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 79 956 - -
Seca8g06317 981 ProSiteProfiles Protein kinase domain profile. 700 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06317 981 Gene3D Transferase(Phosphotransferase) domain 1 779 961 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06317 Seca-Chr8 157464569 157473775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06317 13 936 MAP Kinase Kinase Kinase AT1G08720 56.854 0.0 951
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Seca8g06317 PK_Tyr_Ser-Thr 1.3e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06317 - - aprc:113870732 1639.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06317 8 157464569 157473775 Seca8g06317 8 157464569 157473775 ECH
Seca8g06317 8 157464569 157473775 Seca8g05537 8 146731934 146734041 PCT