Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06303 ATGGGTCGTGCAAGAGTAACTTTGAAGCACATCCAAAATGAGAGAGCTCGCAAAATAGCTTTCTTGCAGAGAATAAAAGGACTAATGAAAAAAGTATCTGATTTTTCTACCATGTGTGGAGCTAATGCATGCTTGATAGTGTATGATGGTGATAGTAGTGGTGGACCAATGACTTGGCCGGAAGACCTCACAAAAGTACACTCCATCCTTAGAATGTATGAGACTCAAACGAATGAGAAACCTCTTAAGGCATTTGATCTCCAAGACTTTTTTGACAATAGGAAGGACATGGTGGAAACTGAGATATCCAAAGTGAAGAAAGAGATTATCAGTGTCAAGTATCCAACTTGGAATCCAAATTTCAATAACTTAGGAGAGGAGGAGCAGAGGATGTTCATTGCTATGTTGGATGATAAGATTCAAACTTGTAATCAAAGGATTAACATGTTGAAGAACAAGCAACAACAAAGTGAAGAAGCCAACTCTAGTTTCATGCAGAACATGGCTCACATACAAAACAAGGCTAAAGAGATTGTTAGCTCTTCAGGTCCAAGCCAACTCAATTTCATGCAGAACATCTCTCAAAGCCAACTTCAAAGTATGGCTCACGTGCAAAACAAGGCTAAAGAGATTGTTCCAAGCCAACTCAATTTACTGCAGAACATCTCTCAAAGCCAACTTCAAATCCCTGCTCCTGTGAAGGCACTTAATGATAATAATGAGATGGTGGATTGCACTAATCAAGTTGGTGTGCCTCTTAATTCAACAAACCAGCTTGTTGAGTCTGTTGATTGGGCTAATCCATTGAGTGAGCATGTGGATTGGACTAGTAAACTTGTTGAGTCTGATCTTTGGGCTAATTACCTTGGTGACGATCTTTTGGGGTCACTGGGTGGGCCACTCAACTTGATGATCCAGTTTTGCATAATATTCCTTCTCAGTGTCATAACAAGCGACAAGGAGCAGCTTTACTTACCTTGCCGCCACCACTGGATGGACACATGA 1005 0.408 MGRARVTLKHIQNERARKIAFLQRIKGLMKKVSDFSTMCGANACLIVYDGDSSGGPMTWPEDLTKVHSILRMYETQTNEKPLKAFDLQDFFDNRKDMVETEISKVKKEIISVKYPTWNPNFNNLGEEEQRMFIAMLDDKIQTCNQRINMLKNKQQQSEEANSSFMQNMAHIQNKAKEIVSSSGPSQLNFMQNISQSQLQSMAHVQNKAKEIVPSQLNLLQNISQSQLQIPAPVKALNDNNEMVDCTNQVGVPLNSTNQLVESVDWANPLSEHVDWTSKLVESDLWANYLGDDLLGSLGGPLNLMIQFCIIFLLSVITSDKEQLYLPCRHHWMDT. 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06303 334 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
Seca8g06303 334 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Seca8g06303 334 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Seca8g06303 334 CDD MADS_SRF_like 2 81 IPR033897 GO:0000981|GO:0000987|GO:0045944
Seca8g06303 334 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Seca8g06303 334 SUPERFAMILY SRF-like 1 78 IPR036879 GO:0003677|GO:0046983
Seca8g06303 334 Coils Coil 133 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06303 Seca-Chr8 157288080 157289084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06303 1 146 Type I MADS-box Gene Family AT5G55690 32.895 3.53e-20 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca8g06303 SRF-TF 7.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06303 - - gmx:100806649 226.098