Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06302 ATGCCACCTGAGCAAAACGACGCCGTTCTTCCCGAAGAAGATCTCGACGACGACGACGAAACGCTAGAGGACGAAGAGGAAGAGGAGGAAGACGACGACGACGTTTTAGGCGAACCCGACGAAGACGAAGAAACCGAACCTTCTCCTTCCACCTCTTCCGCCCTTGCTGCCGTCACCGTAGCCGTGCCTTGTTCCGTCGTCTCAAACGCGTCAACGCCGACAGTCGTTGCCGAGCCAAAACGGCAGCGCACGGAGCAAATGGAGGAGAAGAAGGCGTTGGAGGATTCGCGGAGACTGTTCCAGCGTCTGTGGACCGACGAAGACGAGATCGGGCTTTTGCAAGGGTTCTTGGAGTACACTTCGCAGCGAGGATCCTCTCATCACAACGACACCGCTTTGTTCTATGATCAAATCAAGTCCAAGCTTCAGCTTGGTTTCAACAAGAACCAGCTCGTCGAGAAGCTTCGCAGGTTGAAGAAGAAGTACCGCAACGTTCTCAACAAGATCAGCTCCGGCAAGGAGTTTTCCTTCAAGAGCCCTCACGATCAAGCCACCTTCGAAATCTCGCGCAAGATCTGGAGCAACACGCCTCCAATCGCCGGTCCCGTCGAAGATGACGACGAAATCAACCTTAATCCTAACCCTAACCCTAACCTCAATTTCAGTCTTACGACGTCGTTGAAGAATGAAGCGATGATTGAGAAGAAAACCCCGCCGTCGCGGAAGCGGTCGCGGTCTCGATTGGGGGAGAAGCGCGAGTTGAACTTGAATGATGGACCAGCGTTGAATAAGGATAATGATTATTATAATCATAATTGTATTAGCGATAATAATAATAATAATAACAATGATAATAATTGTAATGGTAGGCATAACGTACAGGGTTTGATTGAAGAGACGGTGAGGAGCTGTTTGACGCCGGTGTTGAAGGAGTTGACGAGTAGTGCCATTGGAAATGGTCCTTTTGGTTTTGGGGGAAGACGGTTTGGGGTTGGAGAGTTCGCATTGAATCACGCGCCATTGAGTTTGTTGGGTTTGGGGAGTGGGGAAATGGTGCGGGATGACAAGTGGAGGAAGCAACAGATTTTGGAGCTGGAAGTGTACTCCAGGCGTTTGGAGCTGGTGCAGGATGAGATCAAGGTTGCTCTGGAGGAGTTGCGATCAGCTGGAGCAGGTGGTGGAGGATGA 1188 0.5093 MPPEQNDAVLPEEDLDDDDETLEDEEEEEEDDDDVLGEPDEDEETEPSPSTSSALAAVTVAVPCSVVSNASTPTVVAEPKRQRTEQMEEKKALEDSRRLFQRLWTDEDEIGLLQGFLEYTSQRGSSHHNDTALFYDQIKSKLQLGFNKNQLVEKLRRLKKKYRNVLNKISSGKEFSFKSPHDQATFEISRKIWSNTPPIAGPVEDDDEINLNPNPNPNLNFSLTTSLKNEAMIEKKTPPSRKRSRSRLGEKRELNLNDGPALNKDNDYYNHNCISDNNNNNNNDNNCNGRHNVQGLIEETVRSCLTPVLKELTSSAIGNGPFGFGGRRFGVGEFALNHAPLSLLGLGSGEMVRDDKWRKQQILELEVYSRRLELVQDEIKVALEELRSAGAGGGG. 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06302 395 PANTHER BNAANNG10740D PROTEIN-RELATED 3 385 IPR007592 GO:0006355
Seca8g06302 395 MobiDBLite consensus disorder prediction 233 262 - -
Seca8g06302 395 Coils Coil 365 385 - -
Seca8g06302 395 MobiDBLite consensus disorder prediction 1 54 - -
Seca8g06302 395 MobiDBLite consensus disorder prediction 9 47 - -
Seca8g06302 395 MobiDBLite consensus disorder prediction 234 258 - -
Seca8g06302 395 Coils Coil 148 168 - -
Seca8g06302 395 Coils Coil 12 32 - -
Seca8g06302 395 Pfam Protein of unknown function, DUF573 100 194 IPR007592 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06302 Seca-Chr8 157271996 157273183 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06302 27 393 GeBP Transcription Factor Family AT5G28040 47.277 3.26e-94 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Seca8g06302 DUF573 5.7e-34 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06302 - - gsj:114372132 370.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06302 8 157271996 157273183 Seca2g05406 2 140603646 140604875 PCT