Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06301 ATGCTTTCACCATTGGTTTCTTGGATCCTGCCATCCTCATCCTCTTCCTCCTCATCAGAAGAAGAACAAGAAGAAGAAGAAAGCCTTGACATTAACACTGACGAATCAGACTATGAAAACGACAATGTCGTCGATGAAGACCAAAAGGACAACGTGCAAGATGAAGAAAACGACCATTATCTCAGTTCATGCGATGTCGATGACGACAACATTCCCGTAGCGCTCGCCGTTTCCGATGCCTCCCCCGCCGTGACGGTGGCCTTCCCCGCCACTGACGATGACAGAAACGCCGCCGCTACTGCCGTTGCCACCAGTATAGTAGCACGCTCGAAACGACAGCGCAGTAGCACCAAGTATTCTGATGGCGTGAGACAGTATCAGAGGCTGTGGACGAAACAGGACGAGATGGAACTGTTGAAGGGATACCTCGATTACATCAAGCAGCAAGGAAGAAAGGCAACCACCTCTCTCCAAAACGACGTAGCTTCGTTGTACGATCACGTGATGCCCAAACTCAACGTGGGTTTCAACAGGAACCAACTTGTTGAGAAGCTGCGTAGGCTAAAGAGAAAGCACAAGGTGGCTTTGGACAAAGGCAAGGAGGTTCAGGTTTCTTTCAAGAGCCCCGAGGAGCAGGCCATTTTCGAAATTTCTCACAAGATTTGGGGCAATGACGTTGACCATGATGAAGCTTTGGATGATGATGAATCAAGACCCGTTCCTGAAAGCTGTGACCTTGTTGAGGTGAAGATGGAACAAGTTGACAATTTTGATGAAATAGACAAAAGGGTGCCGAAGCGGTTGCGGTTTATCACAGATGATGTGAACACAACAAATGAACAGAACAATGGTTATGCTACAACTAGTATACAGGGCTTCATTGAGGACACCATGAGGTCCTGTTTCTCACCATTGCTGAAGGAGCTGTTGGATGATGCTCAGGAAGGGCCAATTGGCGGGTCGATGGTGCCGCCATTATGCCCCGGGGAAGTGGGCGATGAGGAATGGAAAAAGAGGAGAATTGTGGAACTGGAGGTGTATTTGAATCGGTTGGAGTTGTTGCAGGAACAGATCAAAGCTAGATTGGAGGAGTTGCGCTCTAGCTGA 1107 0.486 MLSPLVSWILPSSSSSSSSEEEQEEEESLDINTDESDYENDNVVDEDQKDNVQDEENDHYLSSCDVDDDNIPVALAVSDASPAVTVAFPATDDDRNAAATAVATSIVARSKRQRSSTKYSDGVRQYQRLWTKQDEMELLKGYLDYIKQQGRKATTSLQNDVASLYDHVMPKLNVGFNRNQLVEKLRRLKRKHKVALDKGKEVQVSFKSPEEQAIFEISHKIWGNDVDHDEALDDDESRPVPESCDLVEVKMEQVDNFDEIDKRVPKRLRFITDDVNTTNEQNNGYATTSIQGFIEDTMRSCFSPLLKELLDDAQEGPIGGSMVPPLCPGEVGDEEWKKRRIVELEVYLNRLELLQEQIKARLEELRSS. 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06301 368 Pfam Protein of unknown function, DUF573 127 223 IPR007592 GO:0006355
Seca8g06301 368 Coils Coil 178 198 - -
Seca8g06301 368 Coils Coil 344 368 - -
Seca8g06301 368 MobiDBLite consensus disorder prediction 19 52 - -
Seca8g06301 368 MobiDBLite consensus disorder prediction 1 18 - -
Seca8g06301 368 MobiDBLite consensus disorder prediction 1 57 - -
Seca8g06301 368 PANTHER BNAANNG10740D PROTEIN-RELATED 12 364 IPR007592 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06301 Seca-Chr8 157261739 157262845 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06301 71 367 GeBP Transcription Factor Family AT5G28040 32.292 4.69e-41 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Seca8g06301 DUF573 3.3e-24 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06301 - - gmx:102662842 422.55