Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06288 ATGTTTGATGGAGTCCCAGAGCAGTTCCACCAATTCATAACTCCAAGAACCTCACTACCACTTCACTTACCTTTTCCTCTCCATCATGCCTCTGCCACTCCTAATACAACCACTTTCCCTGCTTTTGATCCTTATAATCCTTCTTCTCATCCTCAATTGCCACTCCAACCCACCAATCTCTTGCACCCATTACACCCTGCTTCCACTCACAAACATGAAGAAGAGAAGGAAGAAAATACCAACACAGTCCCAATGAACTTTGAAATTGATCAAAGAGATCAAAGGCGTCATCAATTGCCACAACTCATTGATCCCAGCTGGACTAATGATGAAGTTCTTGCTCTATTGAGGATCAGATCTAGCATGGAGAGTTGGTTCCCAGATTTCACTTGGGAACATGTTTCAAGGAAGCTAGCAGAGGTTGGATATAAGAGGAGTGCAGAGAAGTGCAAGGAGAAATTTGAAGAAGAAAGTAGATATTTCAACAACATTAATTACACCAAGAGTACTAATAATTATCGGTTTGTTAGTGAGCTTGAAGAGCTTTATCAAGGTGGCAGTGATCATACTGAGGGACAAGACAAGATGGATCATCAAGAGGATTCAAGAAATGATACAAAAGAAAAGGAGAAGAGTAATGAAGAGGTGGAAAAATTAACAAAGGAGAAGAAGAGGAAGAGGGTGGATAAGTTTGAGGTGTTCAAGGGTTTTTGTGAGAGCATTGTGCACAAGATGATGGCTCAACAAGAAGAAATGCATAACAAGCTGATTGAAGATATGCTGAGAAGAGATGAAGAGAAGTTTACAAGAGAGGAAGCTTGGAAGAAGCAAGAGATGGATAAAATGAACAAGGAGCTTGAGATGATGGCACATGAACAAGCTATTGCTGGTGATAGACAAGCCAACATAATTGAATTCTTGAAGAATTTCTCAGCAATAAGTCCCCTTCTTTCAACTCATGAAAGCAGCACCTTATTTGGAGAATACAAACTCAAGGTAACAACAACAACAAATGGTTCAACTTCTTCAAACCCAAATAATGATCCCCTCACTTCTTCTTCTTCCCCATTACAATCACAAAACCCTAATCCTCCTCCTTCTACTATCATTCAAAACAATGTTAATCCAGCAGAAAACCCTAGCACAAGTACTCTTTCTCAAGACACATTATTACAACTTCCTCCTTCTTCTTCCACTTCAGCTCCTATTCCAATCAACCCTAGTTTATCTTCTTCACTTGAGACAAATTCAGTAACTCATCAGAAAGATGATGTTGGGAGAAGATGGCCAAAAGATGAAGTGTTGGCACTGATAAATCTCAGGTGCACTAGTCTGAACAACAACAATGAGGAGAAGGAAGGGAATAATAATAACAACAAGGCTCCACTGTGGGAGAGAATCTCACAAGGGATGTTGGAGTTGGGATACAAGAGGAGTGCAAAGAGATGCAAAGAAAAATGGGAGAACATAAACAAGTACTTTAGAAAAACCAAGGATGCTAATAAGAAGAGGTCCCTTGACTCAAGGACTTGTCCCTACTTTCATCAACTCAGCAATTTGTATAATCAAGGAAAGCTTGTTGTGCAAACTGAGAGGCCTGAAATTAGCCACATGAATAATAATAGTAGTAATAATAATCCAGCAGAGCAAGTGCTACAAGATCAAACACAACCAGTGGGGTCTGGTGGAGATTTCACTATGCAGCAGCAGCAGCAGAAGGAGGAGGTTGATCATCATCATGGAGGTGAGAAAAATTTGATGCAAGTACCTGCTGCTTCTTTGGATTTTGATCAGTTTTAA 1800 0.4006 MFDGVPEQFHQFITPRTSLPLHLPFPLHHASATPNTTTFPAFDPYNPSSHPQLPLQPTNLLHPLHPASTHKHEEEKEENTNTVPMNFEIDQRDQRRHQLPQLIDPSWTNDEVLALLRIRSSMESWFPDFTWEHVSRKLAEVGYKRSAEKCKEKFEEESRYFNNINYTKSTNNYRFVSELEELYQGGSDHTEGQDKMDHQEDSRNDTKEKEKSNEEVEKLTKEKKRKRVDKFEVFKGFCESIVHKMMAQQEEMHNKLIEDMLRRDEEKFTREEAWKKQEMDKMNKELEMMAHEQAIAGDRQANIIEFLKNFSAISPLLSTHESSTLFGEYKLKVTTTTNGSTSSNPNNDPLTSSSSPLQSQNPNPPPSTIIQNNVNPAENPSTSTLSQDTLLQLPPSSSTSAPIPINPSLSSSLETNSVTHQKDDVGRRWPKDEVLALINLRCTSLNNNNEEKEGNNNNNKAPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDANKKRSLDSRTCPYFHQLSNLYNQGKLVVQTERPEISHMNNNSSNNNPAEQVLQDQTQPVGSGGDFTMQQQQQKEEVDHHHGGEKNLMQVPAASLDFDQF. 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06288 599 SMART sant 425 493 IPR001005 -
Seca8g06288 599 SMART sant 103 160 IPR001005 -
Seca8g06288 599 FunFam Trihelix transcription factor GT-2 107 163 - -
Seca8g06288 599 MobiDBLite consensus disorder prediction 336 419 - -
Seca8g06288 599 Coils Coil 202 229 - -
Seca8g06288 599 ProSiteProfiles Myb-like domain profile. 428 491 IPR001005 -
Seca8g06288 599 Gene3D - 107 163 - -
Seca8g06288 599 Gene3D - 429 496 - -
Seca8g06288 599 Pfam Myb/SANT-like DNA-binding domain 427 519 IPR044822 -
Seca8g06288 599 Pfam Myb/SANT-like DNA-binding domain 106 181 IPR044822 -
Seca8g06288 599 MobiDBLite consensus disorder prediction 555 599 - -
Seca8g06288 599 MobiDBLite consensus disorder prediction 186 221 - -
Seca8g06288 599 PANTHER FI21293P1 68 577 - -
Seca8g06288 599 CDD GT1 427 498 - -
Seca8g06288 599 MobiDBLite consensus disorder prediction 336 425 - -
Seca8g06288 599 FunFam Trihelix transcription factor GTL2 429 496 - -
Seca8g06288 599 ProSiteProfiles Myb-like domain profile. 99 158 IPR001005 -
Seca8g06288 599 MobiDBLite consensus disorder prediction 555 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06288 Seca-Chr8 157075722 157078373 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06288 1 523 Trihelix Transcription Factor Family AT5G28300 37.931 2.16e-96 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca8g06288 Myb_DNA-bind_4 6.2e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06288 - - gmx:100804367 661.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06288 8 157075722 157078373 Seca8g06288 8 157075722 157078373 ECH
Seca8g06288 8 157075722 157078373 Seca2g05421 2 140711099 140727624 PCT