Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06284 ATGGAGCAGTATGAAATACTTGAGCAAATAGGAAAAGGTGCTTTTGGTTCAGCGCTACTTGTGAGACATAAGCATGAGAAGAAAAAATATGTGCTGAAGAAGATTCGCCTTGCCCGTCAAACTGAACGCTCTCGTAGATCTGCCCACCTGGAGATGGAACTCATCTCTAAACTACGAAACCCATTTATTGTGGAGTATAAAGATTCATGGGTAGAAAAGGGTTGCTATGTCTGCATTATTATAGGGTATTGTGAGGGTGGAGATATGGCGGAAGCTATAAAGAAAGCTAATGGTGTTCTGTTTTCCGAGGAGAAACTTTGTAAGTGGCTTGTTCAACTTCTTATGGCACTTGACTACCTACACATGAATCACATTCTTCATCGTGATGTCAAGTGTTCAAATATCTTCTTGACGAAAGATCATGACATACGTCTCGGTGATTTTGGACTTGCCAAAATGTTGACTTCTGATGATCTTGCTTCCTCTGTTGTTGGAACTCCTAGCTACATGTGCCCTGAGCTCCTTGCTGATATACCTTATGGTTCTAAATCAGATATTTGGTCCTTGGGATGCTGTATATATGAAATGACATCACACAAGCCCGCATTCAAAGCATTTGATATACAAGCATTGATTAACAAGATTAATAAGTCCATAGTGGCTCCACTGCCAACAAAATATTCTAGTTCATTTCGAGGTCTTGTTAAAAGCATGCTGCGGAAAAATCCAGAGCTTAGGCCCAGTGCTTCAGAGCTGCTTGGGCATCCACATCTTCAATCTTATGTTCTTAAGGTCCATCTCAAAATCAATAGCCCCAGGCGAAGTACATTACCTGTTCATTGGCCAGAATCAAACTACATGAAGAAAACTAGATTTTTGGTGCCAGAAGATGACACTGTTTCCATCTATAGGGATAAGCGGAATTCTTTCAGCAATGATCGGACTCTAAATCCTAGTATATCTGGAGCTGATCAAGATTCTGTATGCTCTACTCTAGAAATAGATTGTACTCCTGATCATTTGAATAAAAGATTAGCAGAACTATATATTGGAGATAGCCGTGAAGTGAAGTCGATCCATAAGCCTGTTGTTTCCAGAACTTCAAGTATTGCTAAGACTCCAAGATTCACTTCATCAAAAGTTTCTGCCACCAACAAGAAATCAATGGAACCCTCAAAGAATCGTAAGGTGGTAAGGCAAGCTGTAAGTTTGCTTCCTGTCTCACATCATAGCACAAAATCTGCTCAGACAAATCGCAGAGCATCACTTCCATTGCCAACAAAGGGAGGTCTTCAGCAGCCTCCTCGCAGGCACAGTGTTGGTTTGCTTAGCCATGTATCTTCACTAGATATCTCAGTAAACTCTCCCCGTATTGACAAGATAGCTGAATTCCCATTAGCATCATATGAAGATTCTTTGTTCCCTATGAACAGAACATCAACCTCTGCACAAGGTTCAACTGTGATAGACAAATGCACGGTAGAGGTATGTGATAAAGCCTCTATTAGGGCTAGTTGTAAGGATGCTTGGCAGGGAATCAAGCGCAGCATGTTGAAGGAAATTGATGAGGATAAAAGTGGTTCCTCTGATCAAAATGCAACAGCGGGCGCATCAAGCCGCACCTCTTCAGATTTGCGGCGCCGACAGTTTGACACTTCATCGTACCAACAAAGGGCTGAAGCCTTGGAAGGGTTGCTTGAATTTAGTGCAAGATTGCTACAACAAGCAAGGTATGATGAACTTGGGGTTTTGTTGAAACCATTTGGTCCCGGGAAGGTTTCCCCAAGGGAAACTGCTATCTGGTTGAGTAAGAGCTTCAAAGAGAACAATTTCAACCCGGAGGAATCCCCATAA 1854 0.4202 MEQYEILEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTERSRRSAHLEMELISKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKANGVLFSEEKLCKWLVQLLMALDYLHMNHILHRDVKCSNIFLTKDHDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTSHKPAFKAFDIQALINKINKSIVAPLPTKYSSSFRGLVKSMLRKNPELRPSASELLGHPHLQSYVLKVHLKINSPRRSTLPVHWPESNYMKKTRFLVPEDDTVSIYRDKRNSFSNDRTLNPSISGADQDSVCSTLEIDCTPDHLNKRLAELYIGDSREVKSIHKPVVSRTSSIAKTPRFTSSKVSATNKKSMEPSKNRKVVRQAVSLLPVSHHSTKSAQTNRRASLPLPTKGGLQQPPRRHSVGLLSHVSSLDISVNSPRIDKIAEFPLASYEDSLFPMNRTSTSAQGSTVIDKCTVEVCDKASIRASCKDAWQGIKRSMLKEIDEDKSGSSDQNATAGASSRTSSDLRRRQFDTSSYQQRAEALEGLLEFSARLLQQARYDELGVLLKPFGPGKVSPRETAIWLSKSFKENNFNPEESP. 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06284 617 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Seca8g06284 617 SUPERFAMILY Protein kinase-like (PK-like) 1 303 IPR011009 -
Seca8g06284 617 MobiDBLite consensus disorder prediction 405 436 - -
Seca8g06284 617 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06284 617 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 567 - -
Seca8g06284 617 MobiDBLite consensus disorder prediction 528 543 - -
Seca8g06284 617 Gene3D Transferase(Phosphotransferase) domain 1 84 273 - -
Seca8g06284 617 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Seca8g06284 617 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06284 617 MobiDBLite consensus disorder prediction 521 552 - -
Seca8g06284 617 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06284 617 FunFam Serine/threonine-protein kinase Nek3 86 332 - -
Seca8g06284 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Seca8g06284 617 CDD STKc_Nek 3 258 - -
Seca8g06284 617 MobiDBLite consensus disorder prediction 405 423 - -
Seca8g06284 617 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06284 Seca-Chr8 157022275 157028043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06284 10 275 MAP Kinase Kinase Kinase AT1G53570 31.868 2.89e-37 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Seca8g06284 Pkinase 6e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06284 K08857 - gmx:100804898 1078.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06284 8 157022275 157028043 Seca8g06284 8 157022275 157028043 ECH
Seca8g06284 8 157022275 157028043 Seca2g05422 2 140738204 140743740 PCT