Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06278 ATGGATAGGGTCTTCTCAGTGGATGAAATCTCCGATCACTTATGGTCGCCGCCGGTGATCCCCGTCGCCGGTGCCGACGAGTCCTCCAAGATGAGCCGCAGCGCTTCTGAGTGGGCCTTCCAGCGCTTCCTCCAGGAAGCTTCCGCTGCCTCTCCTCCTTCTTCTTCCTCCGCTGCCGACGACGTCGTTTTCGTCGAGATCAACGACCAATCCAAACCCAGGCTCAGCAACATCGACGCTCCCGCGTCCCTTCCGACCAACGGCGCCGTTTTGCCCAATGGACCTCCTCCCGTGGCCGTTGATTCCGACGAATACCGGGCTTTCCTCAAGAGCAAGCTCAATCTCGCGTGCGCTGCCGTCGCCATGACTAGGGGATCTTCGGCGAAATCTCCAGATCCAGCCACTTTTCCTGATAGTGGATCACAGCCGTCTAATCCTTCTCAAGTTGGATCTCTGCCCACTTTTAAAGGATCTGGTCCTTCTGTAAATGATCCATCTAAATTACAAGATAAAGATACCAAAGTACCTGCTGGGATTCCTGCCATACCTGCTGTGCAGAAGAAACCTGCTGTTCCAATCAGACCATCAACAAGTGGATCATCAAGAGAACAGTCAGATGATGAGGAAGCTGATGGAGAGACAGAAATGACTGACAACATGGACCCTGCTGATGTAAAACGAGTAAGGAGGATGCTTTCCAATAGGGAGTCAGCCAGACGCTCAAGAAGAAGAAAGCAGGCTCATTTAACTGAGCTGGAAACACAGGTTTCTCAATTAAGAGGTGAAAATTCTTCACTGTTAAAGCGCCTTACTGATGTGAGTCAGAAATACAGTGACTCTGCTGTTGACAACAGAGTATTAAAAGCTGATGTTGAAACATTAAGAGCAAAGGTGAAGATGGCTGAAGAGACTGTCAAAAGAATTACTGGATTGAACCCAATGCTTCATGCCATGGCTGATATATCATCAATGGGCTTGCCATCATTTGATGGAAGCCCTTCAGACAATTCAGCTGATGCAGCTGTTCCTGTGCAAGATGACCCACATCACCACTTCTATCAACCCACATCTAATAATCCTATGCCTAGTCATGATATGAGAGTAAACAATGGGTTAGGGTCTGTGTCTTCAATTGAAAATGTGCAGCAGAATGCTGCTGCAGTGGTAGGAGGGAACAAGATGGGACAAACAGCTCCCCTGCAGCGGGTGGCTAGCTTGGAACACCTTCAGAAGCGGATTCGTGGTGGTGTGGATTCGTGTGGACCTTCTTCCAATGGAGAGCAGTAG 1287 0.4942 MDRVFSVDEISDHLWSPPVIPVAGADESSKMSRSASEWAFQRFLQEASAASPPSSSSAADDVVFVEINDQSKPRLSNIDAPASLPTNGAVLPNGPPPVAVDSDEYRAFLKSKLNLACAAVAMTRGSSAKSPDPATFPDSGSQPSNPSQVGSLPTFKGSGPSVNDPSKLQDKDTKVPAGIPAIPAVQKKPAVPIRPSTSGSSREQSDDEEADGETEMTDNMDPADVKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRGENSSLLKRLTDVSQKYSDSAVDNRVLKADVETLRAKVKMAEETVKRITGLNPMLHAMADISSMGLPSFDGSPSDNSADAAVPVQDDPHHHFYQPTSNNPMPSHDMRVNNGLGSVSSIENVQQNAAAVVGGNKMGQTAPLQRVASLEHLQKRIRGGVDSCGPSSNGEQ. 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06278 428 CDD bZIP_plant_GBF1 227 278 IPR045314 GO:0003700|GO:0006355
Seca8g06278 428 SMART brlzneu 222 286 IPR004827 GO:0003700|GO:0006355
Seca8g06278 428 MobiDBLite consensus disorder prediction 74 96 - -
Seca8g06278 428 Gene3D - 225 280 - -
Seca8g06278 428 MobiDBLite consensus disorder prediction 128 166 - -
Seca8g06278 428 FunFam BZIP transcription factor 224 275 - -
Seca8g06278 428 Pfam Basic leucine-zipper C terminal 293 417 IPR020983 -
Seca8g06278 428 Pfam bZIP transcription factor 225 277 IPR004827 GO:0003700|GO:0006355
Seca8g06278 428 Coils Coil 284 304 - -
Seca8g06278 428 MobiDBLite consensus disorder prediction 123 225 - -
Seca8g06278 428 Coils Coil 235 269 - -
Seca8g06278 428 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 229 244 IPR004827 GO:0003700|GO:0006355
Seca8g06278 428 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 224 276 IPR004827 GO:0003700|GO:0006355
Seca8g06278 428 PANTHER BASIC LEUCINE ZIPPER 63 1 418 - -
Seca8g06278 428 SUPERFAMILY Leucine zipper domain 226 276 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06278 Seca-Chr8 156951007 156954822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06278 1 315 bZIP Transcription Factor Family AT4G02640 42.815 3.35e-56 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca8g06278 bZIP_C 9.3e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06278 K25784 - gmx:100170702 620.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06278 8 156951007 156954822 Seca8g06278 8 156951007 156954822 ECH
Seca8g06278 8 156951007 156954822 Seca2g05438 2 140851237 140856224 PCT