Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06276 ATGGCGGGTAATTGCTCAGAGGGGTTAGGGGACGATTTCTTCGAGCAGATCTTAGCAGTGCCTGATTCTTCACCCTCAGTTGGATATGCCAGAACTGTCATGAGCGATGTGGGACTCTTGCAGTTGGGCTCCACAGCCACTGCTTCTGCTTTGCCTTTGAGAGGAGGAGGAGGAATGCCTTTGGGGTTGAATTTAGAGCAAAGTGGCTTTCTCAGACACCAAGATACCACACGCTTCGTTGACGACGTTGATGCTACTACCATCACCATCAACAATAACCACCAACAACATCCCCTCCATCTCCATAATAACAACAACAATAACAATAGCAATAGCACCTCCTCCTCATCCTCTTCTACTGCAGGAATCACCGATAGGGATTCGATGCATATAAGGGGTTTGTTTTCAACGTTCGGACAAATGCATAATCCTCACTCTCTCCGCCCAACTCTGCCATCTCCTCCACCACCGCCTCAACCCCAACTCCACCTCCACCATCACCACCAACAGCCGTTTCAGAGGCAGTCACCAAGTCCAGCGTCTGTGCCACAACCACCTGGGATTCGTCCTCGAGTGCGAGCAAGAAGGGGGCAAGCCACAGACCCACACAGTATTGCTGAGCGATTACGTCGTGAAAGAATCGCTGAAAGAATGAAGGCATTGCAGGAATTAGTTCCCAGCATCAATAAGACCGACAGAGCAGCAATGCTTGATGAAATTGTGGATTATGTCAAGTTCCTGAGGCTTCAAGTTAAGGTCTTAAGCATGAGTAGACTTGGTGGAGCTGGTGCAGTTGCTCAACTTGTGGCTGATGTTCCCGTTTCTGCAGTGGAGGGCCAAGGGGAGGACATAGAAGGTGGAGTCAACCAGCAAGCCTGGGCCAAGTGGTCCAACGATGGCACAGAACAACAAGTAGCTAAACTTATGGAAGAAGATGTTGGAGCAGCTATGCAATTTCTTCAATCCAAGGCACTTTGTATCATGCCAATATCTCTAGCCTCAGCAATTTTCCGTATGCCCCAATCAGAAGCATCAACAATCATCAAGCCTGAATCAAACAGCCACTCATAG 1071 0.4893 MAGNCSEGLGDDFFEQILAVPDSSPSVGYARTVMSDVGLLQLGSTATASALPLRGGGGMPLGLNLEQSGFLRHQDTTRFVDDVDATTITINNNHQQHPLHLHNNNNNNNSNSTSSSSSSTAGITDRDSMHIRGLFSTFGQMHNPHSLRPTLPSPPPPPQPQLHLHHHHQQPFQRQSPSPASVPQPPGIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPVSAVEGQGEDIEGGVNQQAWAKWSNDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRMPQSEASTIIKPESNSHS. 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06276 356 MobiDBLite consensus disorder prediction 148 162 - -
Seca8g06276 356 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 198 247 IPR011598 GO:0046983
Seca8g06276 356 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 79 334 - -
Seca8g06276 356 MobiDBLite consensus disorder prediction 139 204 - -
Seca8g06276 356 MobiDBLite consensus disorder prediction 96 124 - -
Seca8g06276 356 Gene3D - 193 255 IPR036638 GO:0046983
Seca8g06276 356 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 196 257 IPR036638 GO:0046983
Seca8g06276 356 SMART finulus 204 253 IPR011598 GO:0046983
Seca8g06276 356 FunFam Basic helix-loop-helix transcription factor 193 255 - -
Seca8g06276 356 Pfam Helix-loop-helix DNA-binding domain 203 247 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06276 Seca-Chr8 156928494 156933584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06276 168 353 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 72.727 9.90e-79 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca8g06276 HLH 3.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06276 - - vun:114189791 399.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06276 8 156928494 156933584 Seca8g06276 8 156928494 156933584 ECH