Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06275 ATGACAAGCGTGGTGGACGCAGAGCGAGACAAGTACAGCATGATCAATTTTGAAGAGACCGAGTTGCGACTCGGTCTTCCTGGCGGCTCTGCAAATGATCACGGCGGCGAGTCATCCCTCAAAACCACTGCTGGAAAAAGAGGTTTCTCAGAGACTACTAATGTCGATTTGAAGCTTAATCTTTCTTCCACGAACGACTTAGCCTCTGCTTCTGTCTCTGTTTCTCCCTCAACTGTGGCCACAGAGAAGAAGACCACTGCTACTACTGCACCTCCTCCTCGTGCTAATGACCCTGCAAAACCACCTGCAAAGGCACAAGTGGTGGGTTGGCCACCAGTTCGATCCTTCAGAAAGAACATTGTGAGTGGTCAAAGGAGCAACAACGAAGATGCAGAGAAGAGCAAAACTACCACCACTACCACCAACAACAGTGGCGCAGCGTTCGTGAAGGTGAGCATGGATGGTGCACCATATCTACGGAAGGTGGACCTCAAGCTGTACAAGAGCTACCAAGAGCTGTCAGATGCGCTGGCTAAGATGTTCAGTTCCTTCACTATTGGGAACTGTGGGTCCCATGGTATGAAGGACTTTATGAATGAGAGCAAATTGGTAGACCTTTTGAATGGCTCTGATTATGTACCCACATACGAAGACAAAGACGGAGACTGGATGCTCGTGGGGGATGTGCCCTGGGAAATGTTCGTTGAATCGTGCAAGCGCCTCCGCATAATGAAAGGTTCTGAGGCAATCGGGCTTGCGCCAAGGGCAGTGGAAAAGTGCAAGAACAGAAGCTGA 795 0.4994 MTSVVDAERDKYSMINFEETELRLGLPGGSANDHGGESSLKTTAGKRGFSETTNVDLKLNLSSTNDLASASVSVSPSTVATEKKTTATTAPPPRANDPAKPPAKAQVVGWPPVRSFRKNIVSGQRSNNEDAEKSKTTTTTTNNSGAAFVKVSMDGAPYLRKVDLKLYKSYQELSDALAKMFSSFTIGNCGSHGMKDFMNESKLVDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAVEKCKNRS. 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06275 264 Gene3D - 140 258 - -
Seca8g06275 264 MobiDBLite consensus disorder prediction 35 50 - -
Seca8g06275 264 MobiDBLite consensus disorder prediction 66 106 - -
Seca8g06275 264 SUPERFAMILY CAD & PB1 domains 139 245 - -
Seca8g06275 264 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 251 IPR003311 GO:0005634|GO:0006355
Seca8g06275 264 ProSiteProfiles PB1 domain profile. 146 246 IPR000270 GO:0005515
Seca8g06275 264 MobiDBLite consensus disorder prediction 66 92 - -
Seca8g06275 264 MobiDBLite consensus disorder prediction 118 140 - -
Seca8g06275 264 MobiDBLite consensus disorder prediction 24 50 - -
Seca8g06275 264 Pfam AUX/IAA family 19 255 IPR033389 -
Seca8g06275 264 MobiDBLite consensus disorder prediction 119 140 - -
Seca8g06275 264 FunFam Auxin-responsive protein 141 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06275 Seca-Chr8 156905513 156909242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06275 128 254 B3 DNA Binding Superfamily AT4G23980 32.031 6.63e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Seca8g06275 AUX_IAA 1.1e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06275 K14484 - gmx:100781847 360.147