Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06272 ATGAACTATGCTAAGGATGAGAGTGTTAGATTACTTGTTGGGTATAGGTTTGATCCCACAGATGAGATTCTTGTTAATTTCTACCTCAAGAGGAAGGTCTATGCTCTGCCTCTTCCTGCTCAAGTCATCCAAGAATTTGATGTTTTTCCAAACAGAGCCATGGAAACTCGTCGGAGAGGCCTTCTGGGGCAAGAGAATGGAGGGCCATTGAAAAAGGCAAAGAAATTTCCATCCCCATAA 240 0.4292 MNYAKDESVRLLVGYRFDPTDEILVNFYLKRKVYALPLPAQVIQEFDVFPNRAMETRRRGLLGQENGGPLKKAKKFPSP. 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06272 79 Pfam No apical meristem (NAM) protein 13 50 IPR003441 GO:0003677|GO:0006355
Seca8g06272 79 SUPERFAMILY NAC domain 8 50 IPR036093 GO:0003677|GO:0006355
Seca8g06272 79 ProSiteProfiles NAC domain profile. 11 79 IPR003441 GO:0003677|GO:0006355
Seca8g06272 79 MobiDBLite consensus disorder prediction 59 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06272 Seca-Chr8 156888781 156889140 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06272 5 48 NAC Transcription Factor Family AT5G13180 61.364 4.76e-10 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca8g06272 NAM 1.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06272 - - lja:Lj6g3v0227250.1 67.781