Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06269 ATGACATGCCCTCTTTGCCATAACCTCTTCAAAGATGCTACCACCATCTCTCTCTGCCTTCATACCTTTTGCAGGAAGTGCATATATGAGAAACTCTCGGATGAGGAGATGGATTGCTGTCCAGTGTGCAACATTGATCTAGGCTGCCTTCCGGTTGAAAAACTCAGGCCGGACCATAATTTGCAAGATATAAGGGCAAAAATATTCCCTTTTAAGAGAAAAAAGATCAAGGCCCCAGAAGTTGTGTCTTCAATAACCTTGCCAGCAAAAAGGAAAGAAAGATCACTTTCGTCATTGGTGGTTAGTGCTCCCAAAGTTTCAATGCAAACTGGCTTTACTGGAAAGAGAACAAAAACCAGTACAAAAAAGGCTGCTGCATTACGTGGATGCAGTTTTATACTTGAAGACTCCATAAAGAAGGAAGAAACAAATGGTGAAGATAACACTGATTCTTCTATGGCTGAGACTTCTAAGAAGCATAAGCCCAACAATGAAGATACAGAGAACAATGTGGAACTTACAGAAGGGAAGGTCGATCTCTGGACACCATTGAATTGTCTTGTTGAAGCTGCCAACAGAACAAAGTCCTCCAGGACAAATTCACATTCAAATTTTGTTGCCAAATTAGAGTCTACATCCACTCCTCTTGGTGGACTAGATACTCCTGAAATTAAAACCAAAACAGACCTACCTGCTTCTATGCAGAGTGAATTTAACATTCCTAAAACCAAAAACAAGGATACTGGACATAAAACGATATTTCGAGATGACAAAGACAAGAACAGCTTGCCTTCAGGACCAGCCAAGCGAAGAAGGTTGCGTCCTGCTGGTCAGAAAAGAGTTGCCGCATATGAGATGTCTGCCTCAGCTCCAGCCATGCTAGATGCAACAGGGGGAAAATGCAAAAGAAAAAACAGTCCTATCTGGTTTTCATTAGTCGCTTCAGAGGACCAGAAAGGAGTTGTTCCCTTGCCACAGATCTCAGCATGTTACTTAAGAATCAAAGATGGTACAGTGCCTGTCACATTTATACAAAAGTACCTTGTGAAGAAACTTAATCTTGCCAGCGAAACTGAGGTGGAAATAATGTGCCGGGGTCAGCCAGTGCTGCCATCTCTGCAACTGCATAACTTAGTAGATTTATGGTTCCGGACAGCATCAACCTCAAAGAAGATACCAGCATCTGTAGGGTCCTCAGCTAAGGATTTTGTGATGGTTTTATCATATAGCCGAAAGGCCTTGCCTCCTTGA 1251 0.4245 MTCPLCHNLFKDATTISLCLHTFCRKCIYEKLSDEEMDCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPFKRKKIKAPEVVSSITLPAKRKERSLSSLVVSAPKVSMQTGFTGKRTKTSTKKAAALRGCSFILEDSIKKEETNGEDNTDSSMAETSKKHKPNNEDTENNVELTEGKVDLWTPLNCLVEAANRTKSSRTNSHSNFVAKLESTSTPLGGLDTPEIKTKTDLPASMQSEFNIPKTKNKDTGHKTIFRDDKDKNSLPSGPAKRRRLRPAGQKRVAAYEMSASAPAMLDATGGKCKRKNSPIWFSLVASEDQKGVVPLPQISACYLRIKDGTVPVTFIQKYLVKKLNLASETEVEIMCRGQPVLPSLQLHNLVDLWFRTASTSKKIPASVGSSAKDFVMVLSYSRKALPP. 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06269 416 Gene3D - 292 393 - -
Seca8g06269 416 MobiDBLite consensus disorder prediction 243 266 - -
Seca8g06269 416 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 414 IPR044807 GO:0004842
Seca8g06269 416 MobiDBLite consensus disorder prediction 141 170 - -
Seca8g06269 416 ProSitePatterns Zinc finger RING-type signature. 19 28 IPR017907 -
Seca8g06269 416 SMART ring_2 3 43 IPR001841 -
Seca8g06269 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 97 IPR013083 -
Seca8g06269 416 Pfam Zinc finger, C3HC4 type (RING finger) 3 43 - -
Seca8g06269 416 CDD RING-HC_PCGF 1 44 - -
Seca8g06269 416 MobiDBLite consensus disorder prediction 240 278 - -
Seca8g06269 416 ProSiteProfiles Zinc finger RING-type profile. 3 44 IPR001841 -
Seca8g06269 416 SUPERFAMILY RING/U-box 2 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06269 Seca-Chr8 156851959 156858396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06269 1 335 C3H Transcription Factor Family AT2G30580 44.444 3.30e-82 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06269 K16277 - gmx:100783999 709.909