LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca8g06264	ATGCACAACAGGGTTTGTCTCTTGCTGGCCTTTTGCATCTTGAATGCCCTTCCTGCATGGAGCGTGGATTCAGAGTCATTGATCTTGGGTTGTGGGTTGGGTGAAGGTGGTGGCAAAGATGCTGATGGAAGACAATGGAGCCCTGATAACAAATACCTCTCAGGAGGTAATTCCATCACATCCAAAGCCTCTTTCCAAGACCCTTCTCTTTTATCTGAGATTCCATACATGACAGCACGAGTTTTCACATCTGAGGCAACATACAAATTCCCTGTTCAATCTGATAAACGTTACTGGCTCAGGCTCCATTTTTATCCCTCTGTTTATGGCAGTTTCAACCCCTCTGATTCATATTTCTCTGTTAAAGCAAATGGGGTCACGCTCCTTGCCAATTTCAGCGCCTCAATTACATGTCAGGCCCTTTCACAGGCCTATCTTGATAGAGAGTATTCCCTTGCGCCTTTGAATTCAGATACTCTCACTGTTACCTTCAAGCCTTCTGATAAACACAATGGGGCTTTTGCTTTTGTCAATGGAATTCAGCTGATCCAAATGCCTGAGTTGTTTGATTCAGCTTCAATGGTGGGTTATGCTGACCAAACCGTGGATGCAAAAAGTTTGCATCTTCAGACAATGTTTAGATTAAACGTTGGTGGGCAATATATATCTCCGGTTCATGATTCTGGTCTAAATAGGATGTGGTATGATGATACTCCTTACCTGTTTGGTGCTGCCACTGGTGTTACTACACAAGCTGACAAGAAGGTTAAAATCAACTACGAGAGCATGCCTCAGTATATTGCTCCACCAGATGTCTATTCCACATCAAGATCCATGGGAACCAATAAGGATGTTAACATGGGGTATAATCTCACATGGATTTTCCAAGTTGATCCAAATTCCATGTACCTTACAAGGTTGCATTTTTGTGACTTCTACTTTTCAAAAGTCAATGAGATTGTTTTCAATATATATGTCAACAACCAAACGGCAGAGGCTCAAGCTGATGTGATTGGATGGACAGGAGGTAAAGCAGTGCCAACTTACAAGGATTATGTAGTATATGTCCAAGATGGGCCAGGTGATGAGCAGCTTTGGCTTGCATTGCACCCAGCACCTGATACAAAGCCTGAGTACTATGATGCCATACTCAATGGGGTTGAGATATTCAAGCTCAATGACACTGACCTATCTGGCCCCAATCCTCAACCTTCTGACATGCTGGTTGAGCATGAGGAGAAGGAAAGAACTTTCCAAGACAATAAACATCAAAAAAGGACTTTTGTTATTGGTGGAGCTGCTGGAGGTGCTGCAGGTTTTGCCTTAGTGGCTGCAATTTGTGTTGTTGTGCACCAAAAGAAAAGGAGATCTCCAGGATCATATTCCAACACATCAAGCTGGCTTCCCTTATATGGGAACTCAAACACAACCGGCACCAAATCCACAGGGTCAGGGAAAAGTGTTGGTAGTGCCAACTTAGCCATGGCTCAAGGACTATGCCGTTATTTCTCTTTACAAGAGATGAAACAAGCAACCAAGAATTTTGATGAGGCCAATGTCATTGGTGTAGGAGGCTTTGGAAAGGTTTACAAGGGTGTTGTTGATAATGGGTTTAAAGTGGCAATCAAAAGATCAAACCCACAATCAGAACAAGGAGTCAATGAATTCCAAACTGAAATTGAGATGCTTTCTAAGCTTAGACACAAACATTTGGTGTCCTTGATTGGTTTTTGTGAAGAAGATGATGAAATGTGCCTTGTTTATGACTACATGGCTCTTGGCACTCTAAGAGAACATCTCTACAAGGGAAACAAACCACTGGATACTCTATCATGGAAGCAAAGGTTGGAGATTTGCATTGGAGCAGCAAGAGGCCTTCACTACCTTCACACAGGAGCCAAGTACACCATCATTCATAGAGATGTTAAAACAACCAACATTCTCCTTGATGAAAATTGGGTTGCCAAGGTTTCAGATTTTGGATTGTCAAAAACAGGACCAAACATGAACAATGGTCATGTTAGCACTGTGGTGAAGGGTAGTTTTGGATATTTAGATCCAGAATATTTCAGGAGGCAACAGTTAACTGAAAAATCTGATGTCTACTCATTTGGGGTTGTCCTGTTTGAAGCCCTATGTGCAAGACCAGCTTTAAATCCTAACCTTCCAAAGGAACAAGTAAGCCTTGCAGATTGGGCTCTTCTGTGCAAAAGAAAAGGGACACTGGAGGATATTATTGACCCCAATCTCAAAGGAAAGATAAACCCAGAAAGCTTGAAGAAGTTTGCAGATGCAGCTGAAAAGTGTTTGTCAGATCATGGACTTGATCGCCCTTCCATGAATGATCTATTATGGAATCTGGAGTTTGCTCTGAACCTGCAAGAAAACCCTGATGGTTCAAGCCATGCACCACGTGTTGAAGAAAGTGAGTTTGAAGAGGTAAGCTTGCAAGACAATGACATGGCAGCACATTATAGAAACCTGAACATTGGAAGTGAGAATGAGATTAGCCAAGACTCAAGTGAAAATTCGGCTCCCATCTTCTCACAAATGGTCAATCCAAAAGGGCGATGA	2574	0.4242	MHNRVCLLLAFCILNALPAWSVDSESLILGCGLGEGGGKDADGRQWSPDNKYLSGGNSITSKASFQDPSLLSEIPYMTARVFTSEATYKFPVQSDKRYWLRLHFYPSVYGSFNPSDSYFSVKANGVTLLANFSASITCQALSQAYLDREYSLAPLNSDTLTVTFKPSDKHNGAFAFVNGIQLIQMPELFDSASMVGYADQTVDAKSLHLQTMFRLNVGGQYISPVHDSGLNRMWYDDTPYLFGAATGVTTQADKKVKINYESMPQYIAPPDVYSTSRSMGTNKDVNMGYNLTWIFQVDPNSMYLTRLHFCDFYFSKVNEIVFNIYVNNQTAEAQADVIGWTGGKAVPTYKDYVVYVQDGPGDEQLWLALHPAPDTKPEYYDAILNGVEIFKLNDTDLSGPNPQPSDMLVEHEEKERTFQDNKHQKRTFVIGGAAGGAAGFALVAAICVVVHQKKRRSPGSYSNTSSWLPLYGNSNTTGTKSTGSGKSVGSANLAMAQGLCRYFSLQEMKQATKNFDEANVIGVGGFGKVYKGVVDNGFKVAIKRSNPQSEQGVNEFQTEIEMLSKLRHKHLVSLIGFCEEDDEMCLVYDYMALGTLREHLYKGNKPLDTLSWKQRLEICIGAARGLHYLHTGAKYTIIHRDVKTTNILLDENWVAKVSDFGLSKTGPNMNNGHVSTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEALCARPALNPNLPKEQVSLADWALLCKRKGTLEDIIDPNLKGKINPESLKKFADAAEKCLSDHGLDRPSMNDLLWNLEFALNLQENPDGSSHAPRVEESEFEEVSLQDNDMAAHYRNLNIGSENEISQDSSENSAPIFSQMVNPKGR.	858

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca8g06264	857	ProSiteProfiles	Protein kinase domain profile.	515	790	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca8g06264	857	PANTHER	OS07G0166700 PROTEIN	499	794	IPR045272	GO:0004714\|GO:0006468
	Seca8g06264	857	MobiDBLite	consensus disorder prediction	832	850	-	-
	Seca8g06264	857	FunFam	FERONIA receptor-like kinase	207	393	-	-
	Seca8g06264	857	ProSitePatterns	Protein kinases ATP-binding region signature.	521	543	IPR017441	GO:0005524
	Seca8g06264	857	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	637	649	IPR008271	GO:0004672\|GO:0006468
	Seca8g06264	857	Pfam	Protein tyrosine and serine/threonine kinase	519	783	IPR001245	GO:0004672\|GO:0006468
	Seca8g06264	857	SUPERFAMILY	Protein kinase-like (PK-like)	494	790	IPR011009	-
	Seca8g06264	857	MobiDBLite	consensus disorder prediction	832	857	-	-
	Seca8g06264	857	FunFam	FERONIA receptor-like kinase	26	186	-	-
	Seca8g06264	857	Gene3D	Transferase(Phosphotransferase) domain 1	591	805	-	-
	Seca8g06264	857	CDD	STKc_IRAK	521	788	-	-
	Seca8g06264	857	SMART	serkin_6	515	790	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca8g06264	857	FunFam	Receptor-like protein kinase FERONIA	591	804	-	-
	Seca8g06264	857	FunFam	receptor-like protein kinase FERONIA	477	590	-	-
	Seca8g06264	857	Gene3D	-	207	393	-	-
	Seca8g06264	857	Gene3D	-	30	186	-	-
	Seca8g06264	857	Pfam	Malectin-like domain	30	391	IPR024788	-
	Seca8g06264	857	Gene3D	Phosphorylase Kinase; domain 1	476	590	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca8g06264	Seca-Chr8	156816567	156819140	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca8g06264	24	857	Receptor kinase-like Gene Family	AT3G51550	54.119	0.0	876

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Seca8g06264		Malectin_like	5e-39	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca8g06264	-		-	gmx:100791236	1414.82