Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06262 ATGTCTGCCACCAAGCAATCCAAGGCCAAGAAAACGGCGTCGTCGAAGAAGCCACTCTCCCACCCTCCCTTCGCTGAGAAGATGATAACCGACGCGATTGTGAGCCTGAAGGAGAGGACTGGTTCGAGCCAGTATGCCATAACCAAGTTCATCGAAGGGAAGCACCACAAGGAGTTACCACAGACCTTCCGAAAGCTTATCCTCCATCAGCTGAAAAAGGCGGTTGCCGCCGGCAAGCTCGTTAAGGTTAAGAACTCCTTCAAGCTAGCGCCGACTCGACCTGCTCCGGCGAAGACTACCACTGCTGCTCCTGCTGCTACCAAGAAGCCTAAAGCTGCTGCATCTAAGCCAGCTACCAAGAAGCCAGCTGCTTCTTCCAAGCCCAAGCCCAAAGCTGCAGCGAAACCGAGCACCGCTGCCAAGCCCAAGCCCAAAGCAAAGCCTGCTAAGGCTCCTGCGGGGAAGAAGGTTGCTGCTGCTAAGCCTGCAAGGAAAACGCCCGTAAAGAGTGTGAAGAAGCCTAAGAGCGTGAAATCGCCGGCGAAGAAAGCTAAGAAGTGA 561 0.5472 MSATKQSKAKKTASSKKPLSHPPFAEKMITDAIVSLKERTGSSQYAITKFIEGKHHKELPQTFRKLILHQLKKAVAAGKLVKVKNSFKLAPTRPAPAKTTTAAPAATKKPKAAASKPATKKPAASSKPKPKAAAKPSTAAKPKPKAKPAKAPAGKKVAAAKPARKTPVKSVKKPKSVKSPAKKAKK. 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06262 186 CDD H15 20 92 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca8g06262 186 MobiDBLite consensus disorder prediction 166 186 - -
Seca8g06262 186 Gene3D - 15 102 IPR036388 -
Seca8g06262 186 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 20 91 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca8g06262 186 PRINTS Histone H5 signature 110 124 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca8g06262 186 PRINTS Histone H5 signature 143 160 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca8g06262 186 PRINTS Histone H5 signature 7 28 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca8g06262 186 PRINTS Histone H5 signature 165 184 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca8g06262 186 PANTHER HISTONE H1 7 181 - -
Seca8g06262 186 MobiDBLite consensus disorder prediction 86 186 - -
Seca8g06262 186 Pfam linker histone H1 and H5 family 22 90 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca8g06262 186 SUPERFAMILY "Winged helix" DNA-binding domain 18 100 IPR036390 -
Seca8g06262 186 SMART h15plus2 18 86 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca8g06262 186 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06262 Seca-Chr8 156806161 156807502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06262 23 134 Single Myb Histone (SMH) Gene Family AT1G72740 30.702 6.37e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06262 K11275 - gmx:100785055 119.012