Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06255 ATGGAGACTCCTGTGAATATTATTGTGGGTTCTCATGTCTGGATTGAAGACCCAGAGGTATGTTGGATTGATGGACAAGTATCAAAAATCAATGGAAAGGATGCTGAAATTGAAACTACCAATGGAAAAAAGGTTGTTGCAAAGTTATCAAAAATATATCCCAAGGATATGGAAGCTCCTCCTGGTGGAGTGGATGATATGACTAAACTGTCCTATTTGCACGAGCCTGGAGTCCTGCAGAACTTAAAAGCTAGATATGAATTAAATGAAATATATACTTATACTGGAAATATTCTGATTGCAATAAATCCATTCCAAAGGCTACCTCACATTTATGGTGCACACATGATGCATCAATACAAAGGAGCACCATTTGGAGAATTAAGCCCTCATGTATTCGCAGTTGCTGATGTTGCATATAGGGCGATGGTTAATGAAACAAAAAGCAATTCAATTCTGGTCAGTGGGGAAAGTGGAGCTGGTAAAACTGAAACTACAAAAATGCTTATGCAATACCTTGCTTTCTTAGGCGGTAGGGCTGCTACTGAAGGACGAACAGTTGAGCAACAAGTTCTTGAATCAAATCCAGTCCTGGAAGCATTTGGCAATGCTAAAACTGTCAGAAATAACAATTCTAGTCGTTTTGGTAAATTTGTTGAGATCCAATTTGATAAGAGTGGAAGAATCTCAGGAGCAGCCATCCGTACATACCTTTTAGAAAGATCTCGCGTTTGTCAAATTAATGATCCTGAACGGAACTACCACTGCTTTTATCTTCTTTGTGCTGCACCACAGGAGGAAATTGAGAAATATAAATTAGGAAACCCTAGATCGTTTCACTACCTTAACCAGTCAAAATGCTATGAATTGGCTGATATAAGTGATGCTCGTGAGTACCTTGCCACCCGGAGAGCTATGGATATTGTTGGAATAAGTCAAAAAGATCAGGAAGCCATTTTCAGAGTCGTTGCTTCTATTCTTCATCTTGGTAATATTGATTTTACCAAAGGAAAGGAAGTTGACTCATCAGTTCCTAAAGATGACAAGTCCAAATTCCACCTGAAAACAACTGCTGAGCTTCTCATGTGTGATGTGGATGCCTTAGAAGATGCATTATGTAAGCGTGTCATGATCACCCCTGAAGAAGTTATAAAACGGAGCCTTGACCCACAAAGTGCAGCAGTCAGTAGAGATGGATTGGCAAAAACAATTTATTCTCGGCTATTTGACTGGTTGGTGGACACGATTAATAATTCAATCGGACAAGATCCTAATTCTAAATCTTTGATTGGGGTCCTTGATATCTATGGTTTTGAAAGCTTTAAATCTAACAGTTTTGAGCAGTTTTGCATTAATTTCACAAATGAGAAGTTGCAGCAACATTTCAATCAGGCAAAGTCTCAGACTGAATTTTTCACTGTGTTTAAAATGGAACAAGAAGAATATACAAAGGAGCAGATTAATTGGAGCTACATTGAATTTGTTGACAACCAAGATGTTTTGGACCTTATTGAAAAGAAACCCGGAGGAATCGTTGCTCTTCTCGATGAAGCTTGCATGTTTCCAAAGTCAACTCACGAAACATTTGCAAACAAGCTTTATCAAACATTTAAGAATCACAAGCGCTTTATTAAGCCAAAATTGTCTAGAACGGATTTCACCATTGCTCATTATGCTGGGGAGGTGACATACCAGTCTGACCAATTTTTAGACAAAAACAAGGATTATGTAGTTCCTGAACATCAAGATTTGTTGGGTGCTTCCAAATGTTCTTTTGTAGCTGGCCTTTTCCCACCACCTCCAGAAGAGACATCAAAGTCTTCCAAATTTTCTTCAATTGGTTCTCGTTTTAAGCTACAACTACAACAACTAATGGAAACATTAAATTCTACAGAACCCCATTACATTAGATGCGTGAAACCAAACAACCTCCTTAAGCCTGCAGTTTTTGAGAATGTCAACATTATGCAGCAACTTCGTTGTGGGGGTGTTTTGGAGGCAATCAGAATCAGTTGTGCTGGCTACCCTACTCGCCGTCCTTTCTTTGAATTTGTCAACAGATTTGGCCTCCTTGCCCCAGAGGCCATGGAAGCAAATGATGAAAAGACTGCTTGCCAAAAGATTCTGGAAAATATGGGGCTTAAAGGATACCAGATTGGAAAAACAAAGGTATTCTTGAGAGCAGGTCAGATGGCTGAACTGGATGCACGGAGAGCTCAAGTACTTAGCAATGCAGCAAAAGTTATCCAAGGGCGCATACGAACTCATCAAGCTCGTAAACATTATCGTGCACTGCGAAAGAAGACCATATATGTGCAGTCTCGGTGGAGAGGAAGACTTGCATGCAAAATCTATGAGAACATGCGAAGGGAGGCTGCTGCTGTGAAAATTCAAAAGAACATACGCAGATATGAAGCTAGGAAAGCCTATAAAGAACTTCATGTGTCAGTAATTACACTGCAAACAGCTTTAAGGGCCATGGCTGCTCGCAAGGTGTTCAGATTTAGGAAACAGACTAAAGCCTCAATCAAATTACAGGCTCGGTGGAGGTGTCACAAAGCTTCCTTATATTATAAGAGGCTCAAGAAAGGTATATTAGTTACACAATGCAGATGGAGGGGGCGTGTAGCCAGGAGGGAACTTAGGAAACTGAAAATGGCTGCAAGAGAAACTGGCGCACTTCAAGAAGCAAAGGATAAGCTTGAAAAACGAGTTGAGGAACTCACTTGGCGTCTTCAACTCGAAAAAGGTTTAAGGACCAATCTAGAAGAATCCAAAGCACAGGAGATAGCAAAACTGCAAAACTCCTTGCAGGAGATGCAGAGCAAAGTTGATGAAGCTAATGCTCTGCTCATCAAGGAGCGAGAAAGTGCAAAAAAAGTCATTGAAGAAGCACCTCCTGTTGTTAAAGAAACACAAGTTATTGTTGAAGATACACAGAAGATTGAGGCACTGAGAATGGAAGTTGAGAAACTAAAGACTTCACTTGAGTCAGAGAAACAGAAAGCTGATGACTTTGAAAGAAAATATAATGAAGCTCAAATTTGTAGTGAAGAACGAGGTAAAAAATTAGAAGACACAGAAAAGAAGGTTCGTCAGCTTCAAGAATCATTGACCAGGCTAGAAGAGAAGATTACTAATGTGGAATCAGAGAACCAGGTTCTACGTCAACAAGCTGTGTCTATGGCACCTAATAAGTTCCTTTCAGGACGCTCCAGATCAATTGTCCAGAGAGGTGCTGAAAGTGGGCATCTGTCAGTGGAAACGAAGACACATTCGACTAATCAGGAACTGCATAGCCAATCAATGAACCAGAGGGAATCCTCTGAAGTGGAGGATAGACCACAAAAGTCACTAAATGAGAAACAACAGGAGAACCAAGAGTTACTCATTAGATGTATTGCACAACATCTAGGCTTTGCTGGGAACAGACCAATTGCTGCCTGTATCATATACAAATGCCTCTTGCATTGGAGATCATTTGAAGTTGAGCGTACTAGTGTTTTTGATCGTATCATTCAAACTATTGGCCATGCAATTGAGACCCAGGATAACAATGATATCTTGGCTTATTGGTTATCCAATGCCTCTACACTTCTCTTATTACTCCAGCGCACACTCAAAGCAAGTGGTGCTGCTGGGATGGCTCCGCAACGCCGTCGTTCTTCATCAGCAACCTTGTTTGGGAGGATGACTCAAAGTTTCCGTGGAGCTCCTGCTGGAGTCAATCTTTCTGTAATCAGTGGTAGCTCAAGCAGAGGAGTAGATACATTAAGACAAGTTGAAGCCAAGTACCCAGCTCTGCTTTTCAAACAGCAGCTTACAGCATATGTAGAAAAGATATATGGAATGATTCGTGATAGTTTGAAGAAAGAAATATCTCCCTTGCTTGGATTATGCATCCAGATAGGCACCGAGAACATCCAGAGCTAG 3933 0.4063 METPVNIIVGSHVWIEDPEVCWIDGQVSKINGKDAEIETTNGKKVVAKLSKIYPKDMEAPPGGVDDMTKLSYLHEPGVLQNLKARYELNEIYTYTGNILIAINPFQRLPHIYGAHMMHQYKGAPFGELSPHVFAVADVAYRAMVNETKSNSILVSGESGAGKTETTKMLMQYLAFLGGRAATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKSGRISGAAIRTYLLERSRVCQINDPERNYHCFYLLCAAPQEEIEKYKLGNPRSFHYLNQSKCYELADISDAREYLATRRAMDIVGISQKDQEAIFRVVASILHLGNIDFTKGKEVDSSVPKDDKSKFHLKTTAELLMCDVDALEDALCKRVMITPEEVIKRSLDPQSAAVSRDGLAKTIYSRLFDWLVDTINNSIGQDPNSKSLIGVLDIYGFESFKSNSFEQFCINFTNEKLQQHFNQAKSQTEFFTVFKMEQEEYTKEQINWSYIEFVDNQDVLDLIEKKPGGIVALLDEACMFPKSTHETFANKLYQTFKNHKRFIKPKLSRTDFTIAHYAGEVTYQSDQFLDKNKDYVVPEHQDLLGASKCSFVAGLFPPPPEETSKSSKFSSIGSRFKLQLQQLMETLNSTEPHYIRCVKPNNLLKPAVFENVNIMQQLRCGGVLEAIRISCAGYPTRRPFFEFVNRFGLLAPEAMEANDEKTACQKILENMGLKGYQIGKTKVFLRAGQMAELDARRAQVLSNAAKVIQGRIRTHQARKHYRALRKKTIYVQSRWRGRLACKIYENMRREAAAVKIQKNIRRYEARKAYKELHVSVITLQTALRAMAARKVFRFRKQTKASIKLQARWRCHKASLYYKRLKKGILVTQCRWRGRVARRELRKLKMAARETGALQEAKDKLEKRVEELTWRLQLEKGLRTNLEESKAQEIAKLQNSLQEMQSKVDEANALLIKERESAKKVIEEAPPVVKETQVIVEDTQKIEALRMEVEKLKTSLESEKQKADDFERKYNEAQICSEERGKKLEDTEKKVRQLQESLTRLEEKITNVESENQVLRQQAVSMAPNKFLSGRSRSIVQRGAESGHLSVETKTHSTNQELHSQSMNQRESSEVEDRPQKSLNEKQQENQELLIRCIAQHLGFAGNRPIAACIIYKCLLHWRSFEVERTSVFDRIIQTIGHAIETQDNNDILAYWLSNASTLLLLLQRTLKASGAAGMAPQRRRSSSATLFGRMTQSFRGAPAGVNLSVISGSSSRGVDTLRQVEAKYPALLFKQQLTAYVEKIYGMIRDSLKKEISPLLGLCIQIGTENIQS. 1311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06255 1310 FunFam unconventional myosin-Va 793 840 - -
Seca8g06255 1310 ProSiteProfiles IQ motif profile. 790 819 IPR000048 GO:0005515
Seca8g06255 1310 ProSiteProfiles IQ motif profile. 838 865 IPR000048 GO:0005515
Seca8g06255 1310 FunFam Myosin 2 312 427 - -
Seca8g06255 1310 Gene3D - 439 631 - -
Seca8g06255 1310 FunFam unconventional myosin-Va 841 888 - -
Seca8g06255 1310 Pfam Myosin head (motor domain) 64 727 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca8g06255 1310 PANTHER MYOSIN 54 1295 - -
Seca8g06255 1310 SMART MYSc_2a 57 740 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca8g06255 1310 ProSiteProfiles IQ motif profile. 813 842 IPR000048 GO:0005515
Seca8g06255 1310 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 792 890 IPR027417 -
Seca8g06255 1310 Gene3D Myosin VI head, motor domain, U50 subdomain 312 609 - -
Seca8g06255 1310 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca8g06255 1310 PRINTS Myosin heavy chain signature 490 518 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca8g06255 1310 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca8g06255 1310 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca8g06255 1310 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca8g06255 1310 Pfam IQ calmodulin-binding motif 792 811 IPR000048 GO:0005515
Seca8g06255 1310 Pfam IQ calmodulin-binding motif 744 763 IPR000048 GO:0005515
Seca8g06255 1310 Pfam IQ calmodulin-binding motif 863 882 IPR000048 GO:0005515
Seca8g06255 1310 Pfam IQ calmodulin-binding motif 839 859 IPR000048 GO:0005515
Seca8g06255 1310 FunFam unconventional myosin-Va 744 792 - -
Seca8g06255 1310 Pfam Myosin N-terminal SH3-like domain 9 51 IPR004009 GO:0003774|GO:0005524|GO:0016459
Seca8g06255 1310 Coils Coil 975 1058 - -
Seca8g06255 1310 ProSiteProfiles IQ motif profile. 765 794 IPR000048 GO:0005515
Seca8g06255 1310 Gene3D - 792 838 - -
Seca8g06255 1310 Gene3D - 741 791 - -
Seca8g06255 1310 Gene3D - 839 889 - -
Seca8g06255 1310 Gene3D Kinesin motor domain 65 670 IPR036961 -
Seca8g06255 1310 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Seca8g06255 1310 CDD MYSc_Myo11 76 727 IPR036018 -
Seca8g06255 1310 ProSiteProfiles Dilute domain profile. 1170 1310 IPR002710 -
Seca8g06255 1310 Coils Coil 884 911 - -
Seca8g06255 1310 ProSiteProfiles IQ motif profile. 861 890 IPR000048 GO:0005515
Seca8g06255 1310 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 792 IPR027417 -
Seca8g06255 1310 Gene3D - 675 737 - -
Seca8g06255 1310 MobiDBLite consensus disorder prediction 1084 1105 - -
Seca8g06255 1310 Gene3D - 252 310 - -
Seca8g06255 1310 MobiDBLite consensus disorder prediction 1106 1121 - -
Seca8g06255 1310 FunFam Myosin heavy chain 252 307 - -
Seca8g06255 1310 MobiDBLite consensus disorder prediction 1078 1122 - -
Seca8g06255 1310 SMART iq_5 789 811 IPR000048 GO:0005515
Seca8g06255 1310 SMART iq_5 812 834 IPR000048 GO:0005515
Seca8g06255 1310 SMART iq_5 860 882 IPR000048 GO:0005515
Seca8g06255 1310 SMART iq_5 837 859 IPR000048 GO:0005515
Seca8g06255 1310 SMART iq_5 741 763 IPR000048 GO:0005515
Seca8g06255 1310 SMART iq_5 764 786 IPR000048 GO:0005515
Seca8g06255 1310 ProSiteProfiles IQ motif profile. 742 769 IPR000048 GO:0005515
Seca8g06255 1310 ProSiteProfiles Myosin motor domain profile. 62 739 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca8g06255 1310 Coils Coil 923 957 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06255 Seca-Chr8 156694136 156708370 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06255 1 1302 Myosins gene family AT1G54560 82.655 0.0 2244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06255 K10357 - gmx:100816792 2328.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06255 8 156694136 156708370 Seca8g06255 8 156694136 156708370 ECH
Seca8g06255 8 156694136 156708370 Seca8g05538 8 146775852 146796786 PCT