Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca8g06255 | ATGGAGACTCCTGTGAATATTATTGTGGGTTCTCATGTCTGGATTGAAGACCCAGAGGTATGTTGGATTGATGGACAAGTATCAAAAATCAATGGAAAGGATGCTGAAATTGAAACTACCAATGGAAAAAAGGTTGTTGCAAAGTTATCAAAAATATATCCCAAGGATATGGAAGCTCCTCCTGGTGGAGTGGATGATATGACTAAACTGTCCTATTTGCACGAGCCTGGAGTCCTGCAGAACTTAAAAGCTAGATATGAATTAAATGAAATATATACTTATACTGGAAATATTCTGATTGCAATAAATCCATTCCAAAGGCTACCTCACATTTATGGTGCACACATGATGCATCAATACAAAGGAGCACCATTTGGAGAATTAAGCCCTCATGTATTCGCAGTTGCTGATGTTGCATATAGGGCGATGGTTAATGAAACAAAAAGCAATTCAATTCTGGTCAGTGGGGAAAGTGGAGCTGGTAAAACTGAAACTACAAAAATGCTTATGCAATACCTTGCTTTCTTAGGCGGTAGGGCTGCTACTGAAGGACGAACAGTTGAGCAACAAGTTCTTGAATCAAATCCAGTCCTGGAAGCATTTGGCAATGCTAAAACTGTCAGAAATAACAATTCTAGTCGTTTTGGTAAATTTGTTGAGATCCAATTTGATAAGAGTGGAAGAATCTCAGGAGCAGCCATCCGTACATACCTTTTAGAAAGATCTCGCGTTTGTCAAATTAATGATCCTGAACGGAACTACCACTGCTTTTATCTTCTTTGTGCTGCACCACAGGAGGAAATTGAGAAATATAAATTAGGAAACCCTAGATCGTTTCACTACCTTAACCAGTCAAAATGCTATGAATTGGCTGATATAAGTGATGCTCGTGAGTACCTTGCCACCCGGAGAGCTATGGATATTGTTGGAATAAGTCAAAAAGATCAGGAAGCCATTTTCAGAGTCGTTGCTTCTATTCTTCATCTTGGTAATATTGATTTTACCAAAGGAAAGGAAGTTGACTCATCAGTTCCTAAAGATGACAAGTCCAAATTCCACCTGAAAACAACTGCTGAGCTTCTCATGTGTGATGTGGATGCCTTAGAAGATGCATTATGTAAGCGTGTCATGATCACCCCTGAAGAAGTTATAAAACGGAGCCTTGACCCACAAAGTGCAGCAGTCAGTAGAGATGGATTGGCAAAAACAATTTATTCTCGGCTATTTGACTGGTTGGTGGACACGATTAATAATTCAATCGGACAAGATCCTAATTCTAAATCTTTGATTGGGGTCCTTGATATCTATGGTTTTGAAAGCTTTAAATCTAACAGTTTTGAGCAGTTTTGCATTAATTTCACAAATGAGAAGTTGCAGCAACATTTCAATCAGGCAAAGTCTCAGACTGAATTTTTCACTGTGTTTAAAATGGAACAAGAAGAATATACAAAGGAGCAGATTAATTGGAGCTACATTGAATTTGTTGACAACCAAGATGTTTTGGACCTTATTGAAAAGAAACCCGGAGGAATCGTTGCTCTTCTCGATGAAGCTTGCATGTTTCCAAAGTCAACTCACGAAACATTTGCAAACAAGCTTTATCAAACATTTAAGAATCACAAGCGCTTTATTAAGCCAAAATTGTCTAGAACGGATTTCACCATTGCTCATTATGCTGGGGAGGTGACATACCAGTCTGACCAATTTTTAGACAAAAACAAGGATTATGTAGTTCCTGAACATCAAGATTTGTTGGGTGCTTCCAAATGTTCTTTTGTAGCTGGCCTTTTCCCACCACCTCCAGAAGAGACATCAAAGTCTTCCAAATTTTCTTCAATTGGTTCTCGTTTTAAGCTACAACTACAACAACTAATGGAAACATTAAATTCTACAGAACCCCATTACATTAGATGCGTGAAACCAAACAACCTCCTTAAGCCTGCAGTTTTTGAGAATGTCAACATTATGCAGCAACTTCGTTGTGGGGGTGTTTTGGAGGCAATCAGAATCAGTTGTGCTGGCTACCCTACTCGCCGTCCTTTCTTTGAATTTGTCAACAGATTTGGCCTCCTTGCCCCAGAGGCCATGGAAGCAAATGATGAAAAGACTGCTTGCCAAAAGATTCTGGAAAATATGGGGCTTAAAGGATACCAGATTGGAAAAACAAAGGTATTCTTGAGAGCAGGTCAGATGGCTGAACTGGATGCACGGAGAGCTCAAGTACTTAGCAATGCAGCAAAAGTTATCCAAGGGCGCATACGAACTCATCAAGCTCGTAAACATTATCGTGCACTGCGAAAGAAGACCATATATGTGCAGTCTCGGTGGAGAGGAAGACTTGCATGCAAAATCTATGAGAACATGCGAAGGGAGGCTGCTGCTGTGAAAATTCAAAAGAACATACGCAGATATGAAGCTAGGAAAGCCTATAAAGAACTTCATGTGTCAGTAATTACACTGCAAACAGCTTTAAGGGCCATGGCTGCTCGCAAGGTGTTCAGATTTAGGAAACAGACTAAAGCCTCAATCAAATTACAGGCTCGGTGGAGGTGTCACAAAGCTTCCTTATATTATAAGAGGCTCAAGAAAGGTATATTAGTTACACAATGCAGATGGAGGGGGCGTGTAGCCAGGAGGGAACTTAGGAAACTGAAAATGGCTGCAAGAGAAACTGGCGCACTTCAAGAAGCAAAGGATAAGCTTGAAAAACGAGTTGAGGAACTCACTTGGCGTCTTCAACTCGAAAAAGGTTTAAGGACCAATCTAGAAGAATCCAAAGCACAGGAGATAGCAAAACTGCAAAACTCCTTGCAGGAGATGCAGAGCAAAGTTGATGAAGCTAATGCTCTGCTCATCAAGGAGCGAGAAAGTGCAAAAAAAGTCATTGAAGAAGCACCTCCTGTTGTTAAAGAAACACAAGTTATTGTTGAAGATACACAGAAGATTGAGGCACTGAGAATGGAAGTTGAGAAACTAAAGACTTCACTTGAGTCAGAGAAACAGAAAGCTGATGACTTTGAAAGAAAATATAATGAAGCTCAAATTTGTAGTGAAGAACGAGGTAAAAAATTAGAAGACACAGAAAAGAAGGTTCGTCAGCTTCAAGAATCATTGACCAGGCTAGAAGAGAAGATTACTAATGTGGAATCAGAGAACCAGGTTCTACGTCAACAAGCTGTGTCTATGGCACCTAATAAGTTCCTTTCAGGACGCTCCAGATCAATTGTCCAGAGAGGTGCTGAAAGTGGGCATCTGTCAGTGGAAACGAAGACACATTCGACTAATCAGGAACTGCATAGCCAATCAATGAACCAGAGGGAATCCTCTGAAGTGGAGGATAGACCACAAAAGTCACTAAATGAGAAACAACAGGAGAACCAAGAGTTACTCATTAGATGTATTGCACAACATCTAGGCTTTGCTGGGAACAGACCAATTGCTGCCTGTATCATATACAAATGCCTCTTGCATTGGAGATCATTTGAAGTTGAGCGTACTAGTGTTTTTGATCGTATCATTCAAACTATTGGCCATGCAATTGAGACCCAGGATAACAATGATATCTTGGCTTATTGGTTATCCAATGCCTCTACACTTCTCTTATTACTCCAGCGCACACTCAAAGCAAGTGGTGCTGCTGGGATGGCTCCGCAACGCCGTCGTTCTTCATCAGCAACCTTGTTTGGGAGGATGACTCAAAGTTTCCGTGGAGCTCCTGCTGGAGTCAATCTTTCTGTAATCAGTGGTAGCTCAAGCAGAGGAGTAGATACATTAAGACAAGTTGAAGCCAAGTACCCAGCTCTGCTTTTCAAACAGCAGCTTACAGCATATGTAGAAAAGATATATGGAATGATTCGTGATAGTTTGAAGAAAGAAATATCTCCCTTGCTTGGATTATGCATCCAGATAGGCACCGAGAACATCCAGAGCTAG | 3933 | 0.4063 | METPVNIIVGSHVWIEDPEVCWIDGQVSKINGKDAEIETTNGKKVVAKLSKIYPKDMEAPPGGVDDMTKLSYLHEPGVLQNLKARYELNEIYTYTGNILIAINPFQRLPHIYGAHMMHQYKGAPFGELSPHVFAVADVAYRAMVNETKSNSILVSGESGAGKTETTKMLMQYLAFLGGRAATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKSGRISGAAIRTYLLERSRVCQINDPERNYHCFYLLCAAPQEEIEKYKLGNPRSFHYLNQSKCYELADISDAREYLATRRAMDIVGISQKDQEAIFRVVASILHLGNIDFTKGKEVDSSVPKDDKSKFHLKTTAELLMCDVDALEDALCKRVMITPEEVIKRSLDPQSAAVSRDGLAKTIYSRLFDWLVDTINNSIGQDPNSKSLIGVLDIYGFESFKSNSFEQFCINFTNEKLQQHFNQAKSQTEFFTVFKMEQEEYTKEQINWSYIEFVDNQDVLDLIEKKPGGIVALLDEACMFPKSTHETFANKLYQTFKNHKRFIKPKLSRTDFTIAHYAGEVTYQSDQFLDKNKDYVVPEHQDLLGASKCSFVAGLFPPPPEETSKSSKFSSIGSRFKLQLQQLMETLNSTEPHYIRCVKPNNLLKPAVFENVNIMQQLRCGGVLEAIRISCAGYPTRRPFFEFVNRFGLLAPEAMEANDEKTACQKILENMGLKGYQIGKTKVFLRAGQMAELDARRAQVLSNAAKVIQGRIRTHQARKHYRALRKKTIYVQSRWRGRLACKIYENMRREAAAVKIQKNIRRYEARKAYKELHVSVITLQTALRAMAARKVFRFRKQTKASIKLQARWRCHKASLYYKRLKKGILVTQCRWRGRVARRELRKLKMAARETGALQEAKDKLEKRVEELTWRLQLEKGLRTNLEESKAQEIAKLQNSLQEMQSKVDEANALLIKERESAKKVIEEAPPVVKETQVIVEDTQKIEALRMEVEKLKTSLESEKQKADDFERKYNEAQICSEERGKKLEDTEKKVRQLQESLTRLEEKITNVESENQVLRQQAVSMAPNKFLSGRSRSIVQRGAESGHLSVETKTHSTNQELHSQSMNQRESSEVEDRPQKSLNEKQQENQELLIRCIAQHLGFAGNRPIAACIIYKCLLHWRSFEVERTSVFDRIIQTIGHAIETQDNNDILAYWLSNASTLLLLLQRTLKASGAAGMAPQRRRSSSATLFGRMTQSFRGAPAGVNLSVISGSSSRGVDTLRQVEAKYPALLFKQQLTAYVEKIYGMIRDSLKKEISPLLGLCIQIGTENIQS. | 1311 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca8g06255 | 1310 | FunFam | unconventional myosin-Va | 793 | 840 | - | - | |
| Seca8g06255 | 1310 | ProSiteProfiles | IQ motif profile. | 790 | 819 | IPR000048 | GO:0005515 | |
| Seca8g06255 | 1310 | ProSiteProfiles | IQ motif profile. | 838 | 865 | IPR000048 | GO:0005515 | |
| Seca8g06255 | 1310 | FunFam | Myosin 2 | 312 | 427 | - | - | |
| Seca8g06255 | 1310 | Gene3D | - | 439 | 631 | - | - | |
| Seca8g06255 | 1310 | FunFam | unconventional myosin-Va | 841 | 888 | - | - | |
| Seca8g06255 | 1310 | Pfam | Myosin head (motor domain) | 64 | 727 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Seca8g06255 | 1310 | PANTHER | MYOSIN | 54 | 1295 | - | - | |
| Seca8g06255 | 1310 | SMART | MYSc_2a | 57 | 740 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Seca8g06255 | 1310 | ProSiteProfiles | IQ motif profile. | 813 | 842 | IPR000048 | GO:0005515 |
Showing 1 to 10 of 50 entries
Duplication type information
Functional genes information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca8g06255 | K10357 | - | gmx:100816792 | 2328.52 |
Showing 1 to 1 of 1 entries
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Seca8g06255 | 8 | 156694136 | 156708370 | Seca8g06255 | 8 | 156694136 | 156708370 | ECH | |
| Seca8g06255 | 8 | 156694136 | 156708370 | Seca8g05538 | 8 | 146775852 | 146796786 | PCT |
Showing 1 to 2 of 2 entries