Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06249 ATGGAGGGAAAAACTGGGGATGAAGTGGTGGATATTGAGAGTTCTTCTAGCGGTTCTTTCAGTGATGATTTGGATGATGAGGGATCTTTACCTTCTGAAATTGATGACAAAGTGCATCTTGAGGAACCTCTGACAGAGGAGGAAATAGAAGACCTTATTTCTGAGTTGTTAGAAGTGGAGAGTAAGGCTGCAGAGGCCCAAGAAGCTCTTGAAGAGGAGTCTCTTGCTAAAGTGGAGAGTGAAGTTAGACAAGAATTGATGCAAACTCTAGAGGGTGATGAACTGGAAACTGGTGTTTCTAATGAGATGACTGCTTTCAAAGAAGAGTGGGAAGCTGTTCTGGATGACCTTGAAACTGAAAGTGCCAACTTGCTGGAACAACTTGACGGGGCTGGAATTGAGCTCCCAAGTCTTTATAAGTGGATTGAAAGAGAAGCTCCCAATGGCTGCTGCACTGAAGCATGGAAAATGAGAAATCATTGGGTTGGGTCTCACGCAACTGCCGAAATTGCTAAGTCAATTGCTGATGCTGAAAAGCATCTACATGTAAATAGACCTGTTAGAAGGCGACATGGTAAATTACTGGAAGAGGGCGCTAGTGGTTTTCTCCAAAAAAAACTTTCCGATGAAACCCAGGAGCCTGTAAATAAAGAAATCGAGGGGGATTGGGATCTGTTCAATAAATTAATTTCTGATGGAAGTGCTGTTGATGCTTCTTTTGGCAGTAAGAATTGGGCTTCTGTTTATTTGGCCAGCACACCACAACAAGCTGCCCTGATGGGGCTCAAATTTCCAGGAGTTAATGAGGTGGAGGAAATTGATGATGTTGATGGCAATTCTACTGATCCGTTTGTTGCGGCTGCCATTGCCAATGAAAGAGAACTAGATCTTTCTGATGAGCAAAGGAGACAGTTTAAAAAGGTCAAAGAAGAGGATGATGCAATTGTTGATAGGAAGCTTCAAATCCATTTGAAACGTAGGAGGCATAAAAAAAAAAGTAAACAGCGAGAAATGAGCACGCCTATCCTGTTGACGGAGAGCCACATACAGAAGCCTTCTTCTGTTGATCATTTTAACCCTGTCATGAAGGAAGGGACTAGTGATGTTGGGGAAATTGTGTCAGACAATGACAAGGTCGCATGCCTGAATCTTAAGCATGATAAAATTGAACATTCTGATACCTGTCTTCATCTTGACGAAGAAAAGCCTATGAGTACTGCTTCATTGGACGATGTTATTGAACAGAGAGGAACCAAGCGTCTGAATGATGGTGAGCTTGGTGCTGATAATAAAAAGTCTCGGACTGTTATTGTTGACAAAGATGATGAAGCAGATGCTGCTGAAGATGAGTTGGATTGTGATACGCTACAGAATCAATCCAAGATAAAAGAAGGTTTATGTAACAGTCGTGCTGATGCTTTTCCTTCAGAGTGTCAGGATGAGAAATTTTGCTGTACAGTTTGCGATAAAGTAGCTCTTGAAGTGCACTCACACCCTCTTTTAAAAGTGATCATTTGTGGAGATTGCAATTCCTTGATGAAAGAAAAGACACGTGCAAAGGACCTGGTTGATGAGTGTTCTGAGTGTTACTGTGCATGGTGCGGAGGAAGCAGTGAATTAGTAAGTTGCAAGTTATGCAAGACATTATTCTGCATCAAATGTATACAGAAGAATCTTGGTGTAGAATTTGTTGTTGAAGCTCAGGCCACTAATTGGCATTGTTGTTGTTGCCGTCCAAATCTGCTTGAAAGACTTTCATTGCAACTAGAGAAAGCTATGGGATCTGATAATATACTAGTTTCCAGTTCTGGTAGTGATTCAGATGATTCAGATTCAGAGACAAATGTTACAATGAGTATCAAATCTTGTCATTTTTTTTCCAGCTCTAAACGAAGACGTAAAAAGAAGATTCGGAGGATACTTGATGATGCTGAATTAGGAGAAGAGACGAAAAAGAAAATAGCAATTGAAAAGGAACGTCAGGAACGCTTGAAGTCTTTGCGAGTACAATTTTCTGCCTCATCAATTGAAACGAACTCTGCTGGCTGTAATGGGAATTTGTCTGAAAGTGCAAGCATTGAAATTCTTGGTGATGCACAAGCTGGTTACATAGTGAATGTTGTAAGGGAGAAAGGTGAAGAAGCTGTCAGAATTCCTCCTAGCATCTCAGCTAAACTGAAGGCCCATCAGGTTGCTGGAATAAGATTCATGTGGGAAAATATAATACAGTCAATCAGAAAAGTGAAGTCTGGGGATAAAGGTCTTGGTTGTATTTTAGCTCATACCATGGGCCTTGGTAAAACTTTTCAGGTGATAGCTTTCTTGTACACTGCGATGCGAAGTGTTGATTTGGGGTTAAGAACCGCACTTATAGTCACACCTGTCAATGTACTACATAATTGGCGGCATGAGTTCATCAAATGGTCACCATCAGAATTAAAGCCTCTCAGGGTCTTCATGCTGGAAGATGTAACAAGAGATAGGAGGGCACAACTGCTTGCAAAGTGGAGAGCTAAAGGTGGTGTATTTTTAATAGGCTACACTGCTTTCCGAAACTTGTCATTTGGAAAGCATGTGAAAGATCGGCACATTGCCAGGGAAATCTGCCAAGCTTTGCAGGATGGACCTGACATTCTTGTTTGTGATGAAGCCCATATGATAAAAAATACTAAGGCTGATGTCACTCAAGCCTTGAAACAAGTAAAATGCCAAAGAAGAATTGCGCTTACCGGGTCGCCTCTTCAAAACAATCTCATGGAATATTATTGTATGGTTGATTTTGTACGAGAAGGTTTTCTTGGAAGCAGTCATGAATTTAGGAACCGCTTCCAAAATCCTATAGAGAATGGTCAACATACTAATTCAACTCTGACTGATGTAAAAATTATGAACCAAAGGTCTCATATCCTCTATGAACAGTTAAAAGGTTTTGTCCAAAGAATGGACATGAATGTTGTGAAGAAGGATCTACCTCCCAAAACTGTCTTTGTGATAACAGTCAAGCTTTCTCCCCTACAAAGAAAATTGTATAAGAGATTCCTTGATGTGCATGGGTTCACTAATGTTAGGGCGCATCATGAGAAGTTAAGAAAGAGAAGTTTTTTTGCTGGGTACCAGGCATTGGCTCGGATATGGAATCACCCCGGGATCTTGCAATTGTCAAAAGAAGACAAGGACTACGTGAGACAGGAAGATGCTGTTGAGAATTTTCTTGTTGATGATATCTCCAGTGATGAAAATTCAGATTCTAATGTTCTTACTGGAGAGAAAATGAAGAATACAAATGAAGTGCTACAAAGGAAGGATGGTAATGGCTTCTTCATAAAGGGTTGGTGGAATGATCTTCTTCATGAAAAAATATATAAAGAGCTTGATCAAAGTGGCAAAATGGTTTTGCTGATAGATATACTAACCATGAGTTCTGACGCGGGCGATAAGGTGTTAGTTTTTAGTCAGAGCATCCCAACCCTAGACCTTATCGAGCTTTATCTCTCAAGAATACCTCGACGTGGCAAACGAGGGAAGTTTTGGAAGAAAGGAAAAGATTGGTATAGGCTGGATGGAAGGACAGAGAGCTCAGAAAGGCAGAAGCTTGTTGAGAGATTTAATGAGCCTTTGAATAGGAGGGTAAAATGCACATTGATTTCAACCAGAGCGGGCTCTTTGGGTATTAATCTTCATGCAGCTAACCGTGTTGTTATAGTTGATGGCTCCTGGAATCCCACATATGATCTCCAGGCTATCTATCGAGCTTGGAGGTATGGGCAGAGAAAGCCTGTGTTTGCATATAGATTGCTGGCTCATGGAACTATGGAAGAGAAAATATATAAGCGCCAGGTAACAAAGGAGGGGCTTGCTGCTAGAGTGGTCGATAGACAACAGGTGCATAGGACTATATCTAAAGAAGAAATGCTGCATCTTTTTGAGTTTGGTGATGATGAGAACCCTGAGACTTTGGCTGAACTAAGTCAAGAAAACGGTCACACTTGTGATCAAAATAACCCAATTTTGGTTGGGCATTCGCTGAAACATACAGTACCACATTCAAATGGAAGCAGTTATTCTGATAAGTTGATGGAAAGCTTACTTAGCAAGCATCATCCACGGTGGATTGCCAATTATCATGAACATGAATCTTTGTTACAAGAAAATGAAGAGGAAAAGCTGTCTAAAGAGGAGCAAGATATGGCTTGGGAGGTATATCGGAAATCGCTGGAATGGGAAGAAGTGCAGAGAGTACCACTTGGTGAGTCTATTCCAGATCAAAAGCCAGAAATGCCAACGGCAAAGCCCCATGTATCTGAGATCCGCAGCACCTCACCAAGTAAGCTAAGCAATCGTTTTGTGACACGGAAATGTACCAACCTTGCGCACATGCTGACACTTAGAAGTCAAGGAATAAAAATTGGTTGCAGTACAATTTGTGGGGAATGCGCCCAGGAGATTAGTTGGGAAGACTTGAGGAGTAGAGATAGGAATGTGGCAACCTGA 4491 0.4126 MEGKTGDEVVDIESSSSGSFSDDLDDEGSLPSEIDDKVHLEEPLTEEEIEDLISELLEVESKAAEAQEALEEESLAKVESEVRQELMQTLEGDELETGVSNEMTAFKEEWEAVLDDLETESANLLEQLDGAGIELPSLYKWIEREAPNGCCTEAWKMRNHWVGSHATAEIAKSIADAEKHLHVNRPVRRRHGKLLEEGASGFLQKKLSDETQEPVNKEIEGDWDLFNKLISDGSAVDASFGSKNWASVYLASTPQQAALMGLKFPGVNEVEEIDDVDGNSTDPFVAAAIANERELDLSDEQRRQFKKVKEEDDAIVDRKLQIHLKRRRHKKKSKQREMSTPILLTESHIQKPSSVDHFNPVMKEGTSDVGEIVSDNDKVACLNLKHDKIEHSDTCLHLDEEKPMSTASLDDVIEQRGTKRLNDGELGADNKKSRTVIVDKDDEADAAEDELDCDTLQNQSKIKEGLCNSRADAFPSECQDEKFCCTVCDKVALEVHSHPLLKVIICGDCNSLMKEKTRAKDLVDECSECYCAWCGGSSELVSCKLCKTLFCIKCIQKNLGVEFVVEAQATNWHCCCCRPNLLERLSLQLEKAMGSDNILVSSSGSDSDDSDSETNVTMSIKSCHFFSSSKRRRKKKIRRILDDAELGEETKKKIAIEKERQERLKSLRVQFSASSIETNSAGCNGNLSESASIEILGDAQAGYIVNVVREKGEEAVRIPPSISAKLKAHQVAGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVDLGLRTALIVTPVNVLHNWRHEFIKWSPSELKPLRVFMLEDVTRDRRAQLLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRHIAREICQALQDGPDILVCDEAHMIKNTKADVTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLTDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRKLYKRFLDVHGFTNVRAHHEKLRKRSFFAGYQALARIWNHPGILQLSKEDKDYVRQEDAVENFLVDDISSDENSDSNVLTGEKMKNTNEVLQRKDGNGFFIKGWWNDLLHEKIYKELDQSGKMVLLIDILTMSSDAGDKVLVFSQSIPTLDLIELYLSRIPRRGKRGKFWKKGKDWYRLDGRTESSERQKLVERFNEPLNRRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRAWRYGQRKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPETLAELSQENGHTCDQNNPILVGHSLKHTVPHSNGSSYSDKLMESLLSKHHPRWIANYHEHESLLQENEEEKLSKEEQDMAWEVYRKSLEWEEVQRVPLGESIPDQKPEMPTAKPHVSEIRSTSPSKLSNRFVTRKCTNLAHMLTLRSQGIKIGCSTICGECAQEISWEDLRSRDRNVAT. 1497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06249 1496 CDD SF2_C_SNF 1123 1266 - -
Seca8g06249 1496 ProSiteProfiles ADD domain profile. 473 605 IPR025766 -
Seca8g06249 1496 Gene3D - 697 980 IPR038718 -
Seca8g06249 1496 Pfam Helicase conserved C-terminal domain 1131 1255 IPR001650 -
Seca8g06249 1496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 712 980 IPR027417 -
Seca8g06249 1496 MobiDBLite consensus disorder prediction 1 39 - -
Seca8g06249 1496 Gene3D - 991 1335 IPR027417 -
Seca8g06249 1496 Coils Coil 107 134 - -
Seca8g06249 1496 SMART helicmild6 1158 1255 IPR001650 -
Seca8g06249 1496 Pfam SNF2-related domain 748 1050 IPR000330 GO:0005524|GO:0140658
Seca8g06249 1496 CDD ADDz_ATRX 481 579 - -
Seca8g06249 1496 PANTHER RAD54-LIKE 16 1492 IPR044574 GO:0016887
Seca8g06249 1496 Coils Coil 1374 1394 - -
Seca8g06249 1496 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 748 931 IPR014001 -
Seca8g06249 1496 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1132 1303 IPR001650 -
Seca8g06249 1496 SMART ultradead3 722 943 IPR014001 -
Seca8g06249 1496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 986 1323 IPR027417 -
Seca8g06249 1496 Coils Coil 49 76 - -
Seca8g06249 1496 MobiDBLite consensus disorder prediction 1417 1441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06249 Seca-Chr8 156577385 156610894 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06249 756 1308 RAD5 or RAD16-like Gene Family AT5G43530 25.314 6.46e-32 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca8g06249 SNF2_N 9.9e-53 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06249 K10779 - gmx:100794911 2360.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06249 8 156577385 156610894 Seca8g06249 8 156577385 156610894 ECH