Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06242 ATGGATGATAAGCAAGCAGAATGTAAGAGAAAAGCTCCAATCAGTTATCATGATGGAGAAAGACCAAAACAGAAACAACACTTGATAGATAGAGATGACCAGGTTTCATCAATCGACAACCCAAGACAAGTGTTGTCTGTAAAAGACACTGAAATACCTCCAAAGACTTTTAAACAGGAAATCGTTAAACCATCTCAAACTTCTATGGGAGATATGAAGCCTTGTTCACAAACATTGCAGACGAGGTTGAGCGAGGTAGAACAGATCTCAAATTCACCTTGCATGGCTGCTAGAGATAGAAAATCGTATCCTGAGATAGCATCATCTACAAGTCATTGTCAAGATCCAATTGAGGAGCCTAGCTCTCCTCATATTCAGAGGAAAAATATGTCAAGAGATCATCAGAAGAAGAAGCTTGTGAAATTAAGAATTGAGAAACCTAAGTTTCATCTTGGACCTGGATCAACTAGTAATGGTGGCTCATCTGATGCATCAAATGGAAAACGCAAGAAAGAAGATACCCCACCATGCAATAATAACACTGGAACCAGTAAGGGTAATATTGATATTGCTTCTTCACCTTCAGGAGAAGTTAAAATTTCTTTAAACTGTGAAGCTGCCTTGGGACAACCGAACTTCCATATTCCTAATTTGGATGAAGTTATAAAGTCCATGGAGGAGAAATACAAGACTGTTGAGCCCCAGCTATCGATGGTTAAGTTATTAGATGAGTTATGTGGAAGTTTTTTGAAGATGGGCTTGAATTTAAATCGAAAGGGATCAAATGCCAAGTATACCAATTCACGAAAGGGCAAGCTATTTGTTGGTGACATAGCAAAAGGTTCAGAAAATGTTAAAATATCATTAGTAGGTGAAACTGGAAGTGAGAACTTGCCAAAGTTTAATTACATACCATATAATATAATATATCAAAGTGCCAATGTAAATATTTCACTTGCTCGGATTGCGGATGAGGGTTGCTGTTCTGATTGTTCAGGAGACTGTCTTTCCTTATCATTTCCTTGTGCATGTTCTCAAGAAACTGGTGGAGAGTTTGCTTACACTCCACAAGGTTTGTTAAAAGAAGAATTTTTAACAGCTTGCATGTCTATGAAAATTGAACCTCAAGATCATCATTTTGTGTATTGTCTTGAATGCCCATTGGAGAGGCCTAGGGATGAGAGCAAGGCAGAACCATGCAAGGGGCATCTGGTTCGGAAGTTTATAAAGGAATGCTGGAGGAAATGTGGATGTGACATGCAGTGTGGAAATCGGGTAGTGCAAAGAGGTTTAAGTTGTAAATTGCAGGTGTTCTTGACTCGAGAAGGAAAGGGTTGGGGTGTTAGAACACTAGAAGATTTGCCCAAGGGATGCTTTGTATGTGAATATATTGGGGAAATATTAACTAATACAGAGTTATATGAAAGGACTGTCCATAATTGCGGCAATGACAGACATACATATCCTGTAACCCTTGATGCAGACTGGGGCTCAGAAGGGGTGTTAAAGGATGAGGAGGCACTATGCTTGGATGCTACATATAATGGGAATGTTGCAAGGTTTATCAATCATAGGTGCTTTGATGCAAATCTAATAGACATTCCTGTTGAAGTGGAGACACCTGATCGCCACTATTATCATCTTGCCCTCTTTACAAGCAGAAAGGTGAATGCATACGAGGAGTTGACATGGGATTATGGTATTGACTTTGATGATCTTGACCATCCTATTAAAGCATTTCAATGTCGTTGTGGAAGTGCCTTCTGCCGTAATAAGCAACAAAAAGGAACTACATCATTGAAGAATAAAAAAGTCAGGGATACAAATGCAAACAAATAG 1839 0.3899 MDDKQAECKRKAPISYHDGERPKQKQHLIDRDDQVSSIDNPRQVLSVKDTEIPPKTFKQEIVKPSQTSMGDMKPCSQTLQTRLSEVEQISNSPCMAARDRKSYPEIASSTSHCQDPIEEPSSPHIQRKNMSRDHQKKKLVKLRIEKPKFHLGPGSTSNGGSSDASNGKRKKEDTPPCNNNTGTSKGNIDIASSPSGEVKISLNCEAALGQPNFHIPNLDEVIKSMEEKYKTVEPQLSMVKLLDELCGSFLKMGLNLNRKGSNAKYTNSRKGKLFVGDIAKGSENVKISLVGETGSENLPKFNYIPYNIIYQSANVNISLARIADEGCCSDCSGDCLSLSFPCACSQETGGEFAYTPQGLLKEEFLTACMSMKIEPQDHHFVYCLECPLERPRDESKAEPCKGHLVRKFIKECWRKCGCDMQCGNRVVQRGLSCKLQVFLTREGKGWGVRTLEDLPKGCFVCEYIGEILTNTELYERTVHNCGNDRHTYPVTLDADWGSEGVLKDEEALCLDATYNGNVARFINHRCFDANLIDIPVEVETPDRHYYHLALFTSRKVNAYEELTWDYGIDFDDLDHPIKAFQCRCGSAFCRNKQQKGTTSLKNKKVRDTNANK. 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06242 612 MobiDBLite consensus disorder prediction 1 37 - -
Seca8g06242 612 MobiDBLite consensus disorder prediction 91 192 - -
Seca8g06242 612 MobiDBLite consensus disorder prediction 130 144 - -
Seca8g06242 612 ProSiteProfiles Pre-SET domain profile. 327 430 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca8g06242 612 ProSiteProfiles SET domain profile. 433 567 IPR001214 GO:0005515
Seca8g06242 612 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 106 598 - -
Seca8g06242 612 Pfam SET domain 445 567 IPR001214 GO:0005515
Seca8g06242 612 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 127 605 IPR025776 -
Seca8g06242 612 CDD SET_SETDB-like 299 567 - -
Seca8g06242 612 Gene3D SET domain 254 574 IPR046341 -
Seca8g06242 612 SMART preset_2 275 417 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca8g06242 612 FunFam SET-domain containing protein lysine methyltransferase family protein 278 592 - -
Seca8g06242 612 MobiDBLite consensus disorder prediction 1 51 - -
Seca8g06242 612 MobiDBLite consensus disorder prediction 176 192 - -
Seca8g06242 612 SUPERFAMILY SET domain 284 590 IPR046341 -
Seca8g06242 612 SMART set_7 433 573 IPR001214 GO:0005515
Seca8g06242 612 Pfam Pre-SET motif 278 425 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06242 Seca-Chr8 156506647 156519981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06242 409 590 C2H2 Transcription Factor Family AT2G23740 40.426 1.41e-30 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca8g06242 Pre-SET 1.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06242 - - gsj:114402909 922.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06242 8 156506647 156519981 Seca2g04427 2 129607060 129609696 PCT