Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06241 ATGTCTTCATCTTTTCCTGTTCTTCCCTCTTCCTCTGTGCAGACTGCATCAATAAATTCTAACATCAGAAATGCTGGGCACATGTTTTCAACCCCTGCTGGATGCCCTGATGACATCCCTTTTTCCTCTGTTTCAGAAATACATTCAACAACATTCAGTTCTCACCCTCAAGGAAATGATGATATTTCCTGGGGACCAGATCTGTTTCAAGATATTCAGTTTCCTGATAATGTTTCCATCCAGAATGATCATGTGGACTACAATGCTTCTTACATATCTAGTGACAATGCCAAAACAAATGATTTTGGGGAGTGGGTTGATCAGTTATTGTCAGGTGATGATTCTCCTCACCCAAATTGGAGTCAATTTCTCAGTGATGATAATGTAGCTGAACCAAAATCCAAGGAAACCCAGGTTTCACAACAGCAGCATGTACCATCTAGAGAAGTTAGCGATCTTCCTAATTCAGTGCCAAGTACACAACAAACTAAACCTAGAATGCGTTGGACTCCAGAACTTCATGAGGCCTTTGTGGAGGCAGTCAATAAGCTTGGTGGTAGTGAGAAGGCTACTCCAAAGGGTGTCTTGAACCTGATGAGAGTTGAAGGCCTTACCATTTATCATGTGAAAAGCCACCTACAGAAGTATAGAACTGCCAGATACAAACCTGAATCATCAGAAGGTATGTGTAAGTCTATATATCAGTTCTATTGTTCATATAACCAGATTTGTTTTTTAATTATATTTCTGGATTATGGGGCTTCCTCAGTCCTCAGCACTCCTTACCCCTAA 792 0.4066 MSSSFPVLPSSSVQTASINSNIRNAGHMFSTPAGCPDDIPFSSVSEIHSTTFSSHPQGNDDISWGPDLFQDIQFPDNVSIQNDHVDYNASYISSDNAKTNDFGEWVDQLLSGDDSPHPNWSQFLSDDNVAEPKSKETQVSQQQHVPSREVSDLPNSVPSTQQTKPRMRWTPELHEAFVEAVNKLGGSEKATPKGVLNLMRVEGLTIYHVKSHLQKYRTARYKPESSEGMCKSIYQFYCSYNQICFLIIFLDYGASSVLSTPYP. 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06241 263 Gene3D - 163 222 - -
Seca8g06241 263 FunFam Myb family transcription factor 163 221 - -
Seca8g06241 263 SUPERFAMILY Homeodomain-like 161 218 IPR009057 -
Seca8g06241 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 161 221 IPR017930 -
Seca8g06241 263 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 137 227 IPR044848 GO:0003700
Seca8g06241 263 NCBIfam myb-like DNA-binding domain, SHAQKYF class 164 218 IPR006447 GO:0003677
Seca8g06241 263 MobiDBLite consensus disorder prediction 116 165 - -
Seca8g06241 263 Pfam Myb-like DNA-binding domain 166 217 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06241 Seca-Chr8 156495997 156499113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06241 49 236 G2-like Transcription Factor Family AT5G29000 46.040 2.22e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca8g06241 Myb_DNA-binding 5.1e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06241 - - gmx:100813604 310.071
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06241 8 156495997 156499113 Seca8g06241 8 156495997 156499113 ECH
Seca8g06241 8 156495997 156499113 Seca2g04422 2 129546329 129554863 PCT