Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06236 ATGGTGAGGACTCCTTGTTGTGAGAAGATGGGTTTGAAGAAGGGACCTTGGACACAAGAAGAAGATCAAATATTGATTTCTCATATTCAACAATATGGCCATGGAAACTGGCGCGCCCTTCCAAAACAAGCTGGTTTGTTAAGGTGTGGTAAGAGTTGTAGGCTTCGTTGGATCAATTACCTGAGGCCAGATATTAAACGAGGGAAATTCAGCAAGGAAGAAGTAGAGACCATCCTCAAACTGCATGAAGTTCTTGGAAATAGATGGTCTGCTATTGCTGCAAGATTACCAGGACGAACGGACAATGAAGTAAAGAATTTTTGGCATACTCATTTGAAGAGGCGTGAGAGAAGTCAAGTGCATAGTACTACCAATATCAATACCTCCTCTTATCCCTTGCAAGAGGCACAAGCAACTTCTATTACTTCAGGGGCTTCAATAAATATGTCACGAGTAGATGTGGATGCATCAGGTGCGCCTATAACTTCTAGTCTCACTGGGAAGGTTTTGGTTGTCAATGATCATAGTTTACCTTCAAGGGGAAATCCACCTATTGTAGATCTAGGATTTTATGGTGCAGTGTCTTCTTCTGATCATATTTCAGGAGAAACAATGAGCAGTGATGTTCACAATGAGATGGGTGAAGAAATGGAATTTTGGTATGATCTTTTCATTAGGGGTCATCACAGGGGCATGGAAGTATAA 705 0.4142 MVRTPCCEKMGLKKGPWTQEEDQILISHIQQYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGKFSKEEVETILKLHEVLGNRWSAIAARLPGRTDNEVKNFWHTHLKRRERSQVHSTTNINTSSYPLQEAQATSITSGASINMSRVDVDASGAPITSSLTGKVLVVNDHSLPSRGNPPIVDLGFYGAVSSSDHISGETMSSDVHNEMGEEMEFWYDLFIRGHHRGMEV. 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06236 234 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca8g06236 234 CDD SANT 69 112 IPR001005 -
Seca8g06236 234 CDD SANT 16 61 IPR001005 -
Seca8g06236 234 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Seca8g06236 234 Gene3D - 69 130 - -
Seca8g06236 234 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca8g06236 234 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca8g06236 234 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca8g06236 234 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Seca8g06236 234 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 139 - -
Seca8g06236 234 FunFam MYB-related transcription factor 13 66 - -
Seca8g06236 234 Gene3D - 13 66 - -
Seca8g06236 234 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca8g06236 234 SMART sant 13 63 IPR001005 -
Seca8g06236 234 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06236 Seca-Chr8 156447510 156448895 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06236 1 224 MYB Transcription Factor Family AT2G31180 46.502 1.30e-71 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca8g06236 Myb_DNA-bind_6 8.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06236 K09422 - gmx:102663040 285.034