Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06235 ATGAGGATTATGATCAAAGACGGTGTTTGGAAAAACACCGAAGATGAAATCCTGAAAGCTGCTGTTATGAAATATGGTAAGAACCAGTGGGCTCGAATCTCTTCCCTCCTCGTTCGCAAATCCGCTGGTACGAGTGGCTCGATCCTTCCATTAAGAAGACTGAGTGGACTAGAGAATACTATGAGAAACTGCTTCATCTTGCTAAGCTTATGCCCACACAGTGGAGAACAATTCCTCCCATTCTAG 246 0.4431 MRIMIKDGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAGTSGSILPLRRLSGLENTMRNCFILLSLCPHSGEQFLPF. 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06235 81 Pfam Myb-like DNA-binding domain 8 41 IPR001005 -
Seca8g06235 81 ProSiteProfiles Myb-like domain profile. 2 41 IPR001005 -
Seca8g06235 81 SUPERFAMILY Homeodomain-like 4 41 IPR009057 -
Seca8g06235 81 CDD SANT 10 42 IPR001005 -
Seca8g06235 81 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 42 IPR017930 -
Seca8g06235 81 Gene3D - 5 64 - -
Seca8g06235 81 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 42 IPR047242 GO:0000398|GO:0000974
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06235 Seca-Chr8 156441500 156441927 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06235 1 42 MYB-Related Transcription Factor Family AT1G09770 97.619 1.64e-22 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca8g06235 Myb_DNA-binding 1.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06235 K12860 - mof:131152988 83.9593