Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06231 ATGAGGATTATGATCAAAGGCGGTGTTTGGAAAAACACCGAAGATGAAATCCTAAAAGCTGCTGTTATGAAATATGGTAAGAACCAGTGGGCTCGAATCTCTTCCCTCCTCGTTCGCAAATCCGCCAAGCAATGCAAGGCTCGCTGGTACGAGTGGCTCGATCCTTCCATTAAGAAGACTGAGTGGACTAGAGAAGAGGATGAGAAACTGCTTCATCTTGCTAAGCTTATGCCTACACAGTGGAGAACAATTGCTCCCATTGTAGGTCGTACTCCTTCCCAGTGCCTTGAGAGGTATGAGAAGCTCCTTGATGCAGCTTGTGTAAAGGATGACAACTATGAACCTGGTGATGATCCTCGTAAATTGCGCCCTGGGGAGATTGATCCAAACCCAGAGTCAAAACCTGCACGCCCAGATCCCGTTGATATGGATGAAGATGAAAAGGAGATGCTTTCTGAAGCACGAGCCCGGTTAGCCAACACAAAGGGCAAGAAAGCAAAAAGGAAAGCCAGGGAGAAACAGCTTGAGGAAGCCAGGAGGCTTGCCTCTTTACAAAAAAAGAGGGAGCTCAAGGCTGCTGGAATTGATATCAGGCACCGGAAGAGGAAAAGGAAAGGGATAGATTACAATGCAGAGATTCCATTTGAGAAGAGGCCTCCTCCAGGGTTTTTTGATGTTGCTGATGAAGATAGACCAGTGGAACAACCCAAGTTCCCTACTACAATTGAAGAACTCGAGGGAAAAAGGAGGGTTGATGTTGAGGCACACTTGAGAAAGCAGGACGTTGCAAAAAATAAAATTGCACAAAGGCAAGATGCACCATCTGCTATACTGCATGCCAACCAACTGAATGACCCAGAAGCAGTAAGAAAGAGGTCAAAACTGATGCTTCCGCCACCCCAGATTTCTGAGCAGGAATTGGATGAAATTGCAAGGTTGGGTTATGCCAGTGACCTTGCAGGGAGTGAGGAACTTGCAGAAGGTAGTGGCGCAACACGTGCTCTTCTGGCTAATTATGCACAAACACCTGGCCGAGGAATGACTCCTTTACGAACCCCTCAGAGAACACCAGCTGGTAAAGGAGATGCCATCATGATGGAAGCTGAAAATCTGGCCAGGTTGAGGGAGTCTCAGACACCATTGTTAGGAGGAGAGAACCCAGAGTTGCATCCTTCAGATTTTTCTGGGGTCACTCCTAAGAAAAAGGAGATTCAGACTCCAAATCCAATGCTGACTCCCTCTGCAACCCCTGGAGGTGCAGGTCTCACTCCCAGAACTGGCATGACACCAGCAAGAAATGGCCCTTCTTTAAGCATGACGCCAAAGGGAACTCCTCTTAGGGATGAGCTACATATTAATGAGGACATGGATATGCATGACAGTGCTAAACTTGAGCTACAGAGACAGGCTGAGATGAGAAGAAGTTTGCGCACTGGATTAGGAAGCCTTCCACAGCCTAAAAATGAGTACCAGATAGTGATGCAACCAGTTCCAGAAGATGCTGAAGAGCCTGAGGAGAAGATTGAAGAGGATATGTCTGATAGAATAGCTAGAGAAAAGGCAGAAGAAGAGGCACGGCAGCAGGCATTACTTAGAAAACGATCAAAAGTCCTTCAAAGGGAACTTCCTAGGCCTCCTGCTGCATCATTGGAGCTTATAAGAAATTCCTTGATGAGAGCTGATGGGGACAAGAGTTCCTTTGTTCCACCAACCTCTATTGAGCAAGCTGATGAGATGATTAGAAGGGAGCTTCTAACTTTGCTGGAGCATGACAATGCTAAGTATCCACTTGATGAGAATGTGAGTAAGGAGAAAAAGAAACGAACCAAGCGTGCGGTTAATGGGTCTGCTGTCCCTGTGATAGAAGATTTTGAAGAAGATGAGATGAAAGATGCTGATAAGTTGATAAAGGAAGAGGCCCAGTATCTTTGTGTAGCGATGGGGCATGAAAGTGAACCTCTTGATGAATTTATTGAAGCACATAAAACTTGCCTTAATGATCTCATGTACTTTCCCACTCGTAGTGCCTTTGGTCTCTCAAGTGTTGCTGGGAACATGGAAAAGCTAGCATCTTTGCAGAATGAATTTGAAAATGTGAGAAGCAAGTTGGATGATGGTAAGGAGAAGATAGTACGGCTTGAGAAGAAGGTTATGGTTTTAACGCAAGGCTATGAGACGAGATTAAAAAAAAGCCTTTGGCCGCAAATTGAGGCTACTTTCAAGCAGATGGACATAGCTGCAACAGAATTAGAATGCTTTGAAGCTTTGAAAAAGCAGGAGCAATTAGCAGCATCACACAGGATAAACAATCTGTGGGCTGAAGTACAAAAACAAAAGGAACTTGAGAAAACTTTGCAAAATAAGTATGGGAGTTTAACTGAAGAGCTGGAAAAGATACAAAATATCATGGATCAATACAGGGCACAACCACAACAGCAAGAAGAAATTAAAGCAAGCAGTCGTGTTCAGGAACCAACTGAGGTCACAGCTGATGAAACTGATGTACAGGATACAGGGAATTGTAAAGATGTGCCTCACTCCATAGAACATGGAAGTGCTATGGCAGATGATCCATCTAATGATGGAACTGCTGACCAGCAAGTAGACATTGTGCAAGGTCAGGCTATTTCTAGCCCCAAAAATGACATGGATGTGGATTCTGATAAAATGCAAATGGCACACAACACTGATGTTAAATTGCCAGATGCTACAACTACCGCAGAGGATGACATTGGAAAAGTGGAAGGTGCCAGTACTGATGGTTATATTGATAATGGAGAGACCACACTAGACACGGGTGCTGAGGTGGAAAAAATTAGTGCTGAGGGAAGTGAAGCTCAAGATGTAGTTGTGGAAGCTGTAAATTCACATAATAACAGCATGCAAGAAACCACTGCTTTTGATGAGGGGGATAAGACACGAGTTGCTGATGGCAAAGAAGAGGAGATAAATTAG 2955 0.446 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDIRHRKRKRKGIDYNAEIPFEKRPPPGFFDVADEDRPVEQPKFPTTIEELEGKRRVDVEAHLRKQDVAKNKIAQRQDAPSAILHANQLNDPEAVRKRSKLMLPPPQISEQELDEIARLGYASDLAGSEELAEGSGATRALLANYAQTPGRGMTPLRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPKKKEIQTPNPMLTPSATPGGAGLTPRTGMTPARNGPSLSMTPKGTPLRDELHINEDMDMHDSAKLELQRQAEMRRSLRTGLGSLPQPKNEYQIVMQPVPEDAEEPEEKIEEDMSDRIAREKAEEEARQQALLRKRSKVLQRELPRPPAASLELIRNSLMRADGDKSSFVPPTSIEQADEMIRRELLTLLEHDNAKYPLDENVSKEKKKRTKRAVNGSAVPVIEDFEEDEMKDADKLIKEEAQYLCVAMGHESEPLDEFIEAHKTCLNDLMYFPTRSAFGLSSVAGNMEKLASLQNEFENVRSKLDDGKEKIVRLEKKVMVLTQGYETRLKKSLWPQIEATFKQMDIAATELECFEALKKQEQLAASHRINNLWAEVQKQKELEKTLQNKYGSLTEELEKIQNIMDQYRAQPQQQEEIKASSRVQEPTEVTADETDVQDTGNCKDVPHSIEHGSAMADDPSNDGTADQQVDIVQGQAISSPKNDMDVDSDKMQMAHNTDVKLPDATTTAEDDIGKVEGASTDGYIDNGETTLDTGAEVEKISAEGSEAQDVVVEAVNSHNNSMQETTAFDEGDKTRVADGKEEEIN. 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06231 984 MobiDBLite consensus disorder prediction 808 826 - -
Seca8g06231 984 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Seca8g06231 984 MobiDBLite consensus disorder prediction 808 840 - -
Seca8g06231 984 Coils Coil 167 187 - -
Seca8g06231 984 Coils Coil 775 809 - -
Seca8g06231 984 Gene3D - 59 114 - -
Seca8g06231 984 SMART sant 58 105 IPR001005 -
Seca8g06231 984 SMART sant 6 55 IPR001005 -
Seca8g06231 984 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Seca8g06231 984 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 803 IPR047242 GO:0000398|GO:0000974
Seca8g06231 984 Pfam Myb-like DNA-binding domain 10 70 - -
Seca8g06231 984 MobiDBLite consensus disorder prediction 957 984 - -
Seca8g06231 984 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Seca8g06231 984 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Seca8g06231 984 FunFam CDC5 cell division cycle 5-like 60 120 - -
Seca8g06231 984 Gene3D - 5 58 - -
Seca8g06231 984 CDD SANT_CDC5_II 55 106 IPR047240 -
Seca8g06231 984 MobiDBLite consensus disorder prediction 399 413 - -
Seca8g06231 984 FunFam CDC5 cell division cycle 5-like 5 59 - -
Seca8g06231 984 MobiDBLite consensus disorder prediction 967 984 - -
Seca8g06231 984 Pfam pre-mRNA splicing factor component 406 654 IPR021786 -
Seca8g06231 984 MobiDBLite consensus disorder prediction 110 150 - -
Seca8g06231 984 Coils Coil 689 716 - -
Seca8g06231 984 CDD SANT 10 53 IPR001005 -
Seca8g06231 984 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Seca8g06231 984 MobiDBLite consensus disorder prediction 380 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06231 Seca-Chr8 156419646 156424776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06231 1 835 MYB-Related Transcription Factor Family AT1G09770 76.464 0.0 1259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca8g06231 Myb_Cef 7.2e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06231 K12860 - gmx:100801352 1597.02