Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06222 ATGTGCGAAGCCCTAAAGAGTCAATACCAGTTGTGCGAGGAAATCGGTCGCGGCCGTTTTGGCACCATCTTCCGCTGCTTCAACCCTATTTCCAACCACTCCTTCGCCTGCAAAGTCATCGACAAATCTCTCCTCGCCGATTCCACCGATCGTGAATGCCTCGAAAACGAACCCAAATACATGTCCCTCCTTTCACCACACCCTAACATCCTTCAAATTTTTGATGTTTTTGAAAACGACGACGTTTTATCCATCGTCCTTGAGCTCTGCAAGCCTCTAACCCTTCTCGACCGCATCGTCGCTAACCCTAACCCTCTTTCCGAGCCTCAAGCCGCTTCCCTTATAAAGCAGCTTCTAGAAGCCGTCGCACACTGCCACCGCCTCGGCGTGGCGCACCGTGATATCAAGCCTGATAATATCCTCTTTGACTCTGCTGATAATCTGAAACTCGCTGATTTTGGTTCCGCTGAGTGGTTCGGCGACGGGAGGAGCATGAGCGGAGTGGTTGGAACGCCGTATTACGTGGCGCCGGAGGTTCTGATGGGAAGGGATTATAACGAGAAGGTTGATGTTTGGAGTTGTGGTGTGATATTGTACATAATGTTGGCTGGAATTCCACCGTTTTATGGAGATTCTGCGGTTGAGATTTTTGAAGCTGTTGTTAGGGCTAATCTAAGGTTTCCTTCTAGAATCTTCCGATCTGTTTCCCCTGCTGCTAAGGATCTCTTGCGCAAGATGATCTGCAGGGACAGTTCCACGAGAATATCCGCAGAGCAAGCCTTGAGACACCCTTGGATCTTGAGTGGTGGTGACATGGCTAATGTGAATTGA 831 0.4958 MCEALKSQYQLCEEIGRGRFGTIFRCFNPISNHSFACKVIDKSLLADSTDRECLENEPKYMSLLSPHPNILQIFDVFENDDVLSIVLELCKPLTLLDRIVANPNPLSEPQAASLIKQLLEAVAHCHRLGVAHRDIKPDNILFDSADNLKLADFGSAEWFGDGRSMSGVVGTPYYVAPEVLMGRDYNEKVDVWSCGVILYIMLAGIPPFYGDSAVEIFEAVVRANLRFPSRIFRSVSPAAKDLLRKMICRDSSTRISAEQALRHPWILSGGDMANVN. 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06222 276 SMART serkin_6 9 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06222 276 Gene3D Phosphorylase Kinase; domain 1 1 91 - -
Seca8g06222 276 CDD STKc_CAMK 8 265 - -
Seca8g06222 276 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Seca8g06222 276 Pfam Protein kinase domain 9 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06222 276 FunFam Phosphoenolpyruvate carboxylase kinase 1 1 91 - -
Seca8g06222 276 PANTHER SERINE/THREONINE-PROTEIN KINASE 5 267 - -
Seca8g06222 276 ProSiteProfiles Protein kinase domain profile. 9 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06222 276 SUPERFAMILY Protein kinase-like (PK-like) 7 268 IPR011009 -
Seca8g06222 276 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Seca8g06222 276 FunFam Phosphoenolpyruvate carboxylase kinase 2 1 276 - -
Seca8g06222 276 Gene3D Transferase(Phosphotransferase) domain 1 94 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06222 Seca-Chr8 156237788 156239250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06222 3 274 EF-hand Containing Proteins AT1G50700 40.727 2.04e-73 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca8g06222 Pkinase 2.6e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06222 - K08794 gmx:548089 471.47