Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06221 ATGGACCAAGCACTTTTGGATGACATAATCAATCGCCTTCTTGAAGTTCGTTGCCGTCCAGGGAAGCAGGTGCAGCTATCGGAGTCGGAGATCCGCCAGCTCTGTGCAACTTCCAGAGAGATTTTCTTGCAACAGCCAAATTTATTGGAGCTTGAAGCACCCATTAAGATTTGTGGTGACGTACATGGTCAATTTTCTGATCTTTTAAGGCTTTTTGAGTATGGTGGATTACCTCCTGAGGCCAACTACTTGTTTTTGGGGGATTATGTGGATCGAGGGAAGCAAAGTTTAGAAACAATATGCCTTCTTCTAGCATATAAAGTAAAATATCCTGAGAACTTTTTCCTTTTGAGGGGAAACCATGAATGTGCTTCTATAAACCGTATATATGGATTTTATGATGAGTGTAAAAGAAGGTTCAATGTAAGGTTATGGAAGGTATTCACAGATTGCTTCAATTGCCTGCCTGTGGCAGCCCTCATTGATGAAAAGATCTTGTGTATGCATGGGGGACTTTCTCCTGACTTACTTAATTTGGATCAGATTAGAAATCTTCAGCGGCCGACCGATGTGCCTGATACAGGTTTGCTTTGCGATCTCCTTTGGTCAGACCCAAGCAAAGATGTTCAAGGTTGGGGAATGAATGACAGGGGAGTTTCATATACATTTGGTGCTGATAAGGTTGCAGAGTTTCTTCAGAAACATGATTTGGATCTTATTTGTCGTGCTCATCAGGTTAAACTCCTGCCTTTGGTGCTCGTGGTGGAGGATGGATATGAGTTCTTTGCTAACCGGCAGCTTGTAACAATATTTTCGGCACCTAATTACTGTGGGGAGTTTGATAATGCTGGCGCTATGATGAGTGTTGATGAGACACTAATGTGCTCTTTCCAAATATTAAAGCCAGCTGATAAAAAAGCAAAGCTCAATTTTGGAAGTACAACCACTACTAAACCAGGAAATTCTCCAGCAGGTGTAAAGGTAGGAAGATAG 993 0.4199 MDQALLDDIINRLLEVRCRPGKQVQLSESEIRQLCATSREIFLQQPNLLELEAPIKICGDVHGQFSDLLRLFEYGGLPPEANYLFLGDYVDRGKQSLETICLLLAYKVKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKVFTDCFNCLPVAALIDEKILCMHGGLSPDLLNLDQIRNLQRPTDVPDTGLLCDLLWSDPSKDVQGWGMNDRGVSYTFGADKVAEFLQKHDLDLICRAHQVKLLPLVLVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADKKAKLNFGSTTTTKPGNSPAGVKVGR. 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06221 330 MobiDBLite consensus disorder prediction 311 330 - -
Seca8g06221 330 SUPERFAMILY Metallo-dependent phosphatases 20 307 IPR029052 -
Seca8g06221 330 Pfam Calcineurin-like phosphoesterase 54 245 IPR004843 GO:0016787
Seca8g06221 330 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 9 308 - -
Seca8g06221 330 CDD MPP_PP1_PPKL 6 302 - -
Seca8g06221 330 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Seca8g06221 330 SMART pp2a_7 26 304 IPR006186 GO:0016787
Seca8g06221 330 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Seca8g06221 330 Gene3D - 1 313 IPR029052 -
Seca8g06221 330 PRINTS Serine/threonine phosphatase family signature 266 282 IPR006186 GO:0016787
Seca8g06221 330 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Seca8g06221 330 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Seca8g06221 330 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Seca8g06221 330 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Seca8g06221 330 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Seca8g06221 330 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Seca8g06221 330 FunFam Serine/threonine-protein phosphatase 52 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06221 Seca-Chr8 156185990 156189759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06221 33 239 Calmodulin-binding Proteins AT5G63870 31.855 6.07e-29 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06221 K06269 - gmx:100794578 637.491