Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06213 ATGGCGAACCCGTGGTGGACCGGGTCAGTTGGTCTAGGCGGTGTAGACAACTCGAGCAACTCTTCACCAATGAAAAAACCGGATCTAGGCTTCTCCATGAACGACAGCGTCGTAACAGGGAACCAAAGCGGTTGCGTTGGCGATGAAGAAGAAGATGAGAGAGAAAACAGTGACGAACCAAAAGAAGGAGCAATTGAAGTCGCTACCACGCGCCGTCCAAGAGGCCGTCCTCCTGGTTCAAAAAACAAGCCAAAGCCACCGATATTCGTGACAAGAGACAGTCCTAACGCACTTCGAAGCCACGTTATGGAGATAGCAAGTGGAGCAGATATCGCCGATTGCGTTGTTCAGTTCGCCAGAAGGCGTCAAAGAGGTGTTTGCATTCTCAGCGGCAGTGGAACCGTCGTCAACGTTTCTCTCCGGCAGCATACGGCGCCTGGCGCCGTCATGGCGCTTCACGGCCGGTATGATATACTGTCGTTGACCGGTTCGATCCTTCCTGGACCGTCCTTGCCGGGAGCAAGTGGTTTGACTATTTATCTCTCTGGAGGTCAGGGACAGGTTGTCGGCGGCGGAGTGGTTGGTCCGCTGGTGGCGGCGGGACCGGTTATGATAATGGCGGCAACGTTTTCGAATGCAACGTATGAGAGATTGCCGTTGGAGGATGGTACTGAGCAGGAAGGTCAGGGGCAAGGTGGTAATTGTTCTCCTCCAGGGATGGGACAACAGGGTGGAGGTTCCGTCGGTGAAGCACCGTCGTCGATTCCGGTTTATAGTAATCTTCCTCCCAATTTGACTCTTCCGAATGGGCAACAGCTTAACCATGAAGCTTATAATTCTCCTTGGGCTCATGGTCATGCCAGACCACCTTTCTAA 876 0.5331 MANPWWTGSVGLGGVDNSSNSSPMKKPDLGFSMNDSVVTGNQSGCVGDEEEDERENSDEPKEGAIEVATTRRPRGRPPGSKNKPKPPIFVTRDSPNALRSHVMEIASGADIADCVVQFARRRQRGVCILSGSGTVVNVSLRQHTAPGAVMALHGRYDILSLTGSILPGPSLPGASGLTIYLSGGQGQVVGGGVVGPLVAAGPVMIMAATFSNATYERLPLEDGTEQEGQGQGGNCSPPGMGQQGGGSVGEAPSSIPVYSNLPPNLTLPNGQQLNHEAYNSPWAHGHARPPF. 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06213 291 CDD DUF296 99 182 IPR005175 -
Seca8g06213 291 PIRSF ESCAROLA 15 291 IPR014476 GO:0003680
Seca8g06213 291 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 42 284 IPR014476 GO:0003680
Seca8g06213 291 MobiDBLite consensus disorder prediction 222 291 - -
Seca8g06213 291 SUPERFAMILY AF0104/ALDC/Ptd012-like 95 222 - -
Seca8g06213 291 Gene3D - 98 227 - -
Seca8g06213 291 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 212 IPR005175 -
Seca8g06213 291 FunFam AT-hook motif nuclear-localized protein 98 226 - -
Seca8g06213 291 MobiDBLite consensus disorder prediction 227 278 - -
Seca8g06213 291 MobiDBLite consensus disorder prediction 1 94 - -
Seca8g06213 291 ProSiteProfiles PPC domain profile profile. 95 231 IPR005175 -
Seca8g06213 291 MobiDBLite consensus disorder prediction 12 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06213 Seca-Chr8 156129310 156130185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06213 1 291 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 56.209 3.74e-89 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06213 - - gmx:100795097 373.629